miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


3 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1018Hordeum vulgareCTTATATTATGGGACGGAGGGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_5727.1 cdna:novel chromosome:030312v2:1:440381374:440383150:-1 gene:MLOC_5727 transcript:MLOC_5727.109910550
5'     CTTATATTATGGGACGGAGGG        3'
       |||||||||||||||||||||
3' GCAAGAATATAATACCCTGCCTCCCTCATAAA 5'
1071Hordeum vulgareCTTATATTATGGGACGGAGGGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_58552.5 cdna:novel chromosome:030312v2:2:475555959:475559690:-1 gene:MLOC_58552 transcript:MLOC_58552.524700121.52
5'     CTTATATTATGGGACGGAGGG        3'
       ||||o||||||||||o| |||
3' TGCAGAATGTAATACCCTGTCGCCCTCATTAA 5'
1080Hordeum vulgareCTTATATTATGGGACGGAGGGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_69110.1 cdna:known chromosome:030312v2:3:373793193:373797625:1 gene:MLOC_69110 transcript:MLOC_69110.1017210178.52
5'     CTTATATTATGGGACGGAGGG        3'
       |o||||||||||o| ||||||
3' TGTTGGATATAATACCTTACCTCCCTCATGTA 5'
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