miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


4 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
951Hordeum vulgareCTTCCGTCCCAAAATAAGTGAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_75925.3 cdna:known chromosome:030312v2:3HL:6935342:6940187:1 gene:MLOC_75925 transcript:MLOC_75925.3217900.021233
5'     CTTCCGTCCCAAAATAAGTGA        3'
         ||||||||||||||||||
3' TGAAACAGGCAGGGTTTTATTCACAGAGTTGA 5'
1057Hordeum vulgareCTTCCGTCCCAAAATAAGTGAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_52653.1 cdna:known chromosome:030312v2:7HS:3583589:3589465:-1 gene:MLOC_52653 transcript:MLOC_52653.1211920771.5
5'     CTTCCGTCCCAAAATAAGTGA        3'
       |o||||| |||||||||||||
3' TGAGGGAGGCAAGGTTTTATTCACTGAGTTCG 5'
1079Hordeum vulgareCTTCCGTCCCAAAATAAGTGAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_75925.3 cdna:known chromosome:030312v2:3HL:6935342:6940187:1 gene:MLOC_75925 transcript:MLOC_75925.3217900.02153.753
5'     CTTCCGTCCCAAAATAAGTGA        3'
         ||||||||||||||||||
3' TGAAACAGGCAGGGTTTTATTCACAGAGTTGA 5'
1090Hordeum vulgareCTTCCGTCCCAAAATAAGTGAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_69556.1 cdna:novel chromosome:030312v2:5HS:841593:846345:-1 gene:MLOC_69556 transcript:MLOC_69556.1240510841.5
5'     CTTCCGTCCCAAAATAAGTGA        3'
       |o||||||||||||||||||
3' TGAGGGAGGCAGGGTTTTATTCACAGCGACGA 5'
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