miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


3 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1970Vitis viniferaCTTGGAGTGAAGGGAGCTCTCalignmentplotGSM458931-2730VIT_13s0067g01630.t01 cdna:novel chromosome:IGGP_12x:13_random:914710:922589:-1 gene:VIT_13s0067g01630 transcript:VIT_13s0067g01113810222
5'     CTTGGAGTGAAGGGAGCTCTC        3'
        |||||||||||||||||| |
3' TCTATAACCTCACTTCCCTCGAG-GTTGAAGT 5'
2014Vitis viniferaCTTGGAGTGAAGGGAGCTCTCalignmentplotGSM458931-2730VIT_03s0038g01150.t01 cdna:novel chromosome:IGGP_12x:3:880653:881315:-1 gene:VIT_03s0038g01150 transcript:VIT_03s0038g01150.t0112410.04223.5
5'     CTTGGAGTGAAGGGAGCTCTC        3'
        |||||o||||||| ||| ||
3' TTCGAAACCTTACTTCCCACGA-AGTTCATAC 5'
2031Vitis viniferaCTTGGAGTGAAGGGAGCTCTCalignmentplotGSM458931-2730VIT_17s0000g02950.t01 cdna:novel chromosome:IGGP_12x:17:2721139:2722142:-1 gene:VIT_17s0000g02950 transcript:VIT_17s0000g02950.t25880.01213.5
5'     CTTGGAGTGAAGGGAGCTCTC        3'
       | |||||||| ||||o| |||
3' GTAAGTACCTCACTACCCTTG-GAGAGTCGTA 5'
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