miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


2 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1974Vitis viniferaGAGCCAAGGATGACTTGCCGTalignmentplotGSM458931-2730VIT_06s0004g02270.t01 cdna:novel chromosome:IGGP_12x:6:2680757:2687576:1 gene:VIT_06s0004g02270 transcript:VIT_06s0004g02270.t01011460222.5
5'     GAGCCAAGGATGACTTGCCGT        3'
       o|||||||o|||| ||||||o
3' TCGTTTCGGTTCTTACTAAACGGCGGGTCGTT 5'
1990Vitis viniferaGAGCCAAGGATGACTTGCCGTalignmentplotGSM458931-2730VIT_08s0007g08250.t01 cdna:novel chromosome:IGGP_12x:8:21597124:21603336:1 gene:VIT_08s0007g08250 transcript:VIT_08s0007g08250.t115130223
5'     GAGCCAAGGATGACTTGCCGT        3'
       o|||||||o|||| ||||| |
3' TATGTTCGGTTCTTACTAAACGG-ACTTTTAT 5'
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