miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




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4 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
269Arabidopsis thalianaTAGAAGGGAGTGAGTTCTCGalignmentplotGSM278335-4060AT5G38660.1 cdna:known chromosome:TAIR10:5:15473109:15475552:-1 gene:AT5G38660 transcript:AT5G38660.128010.03136.53
5'     TAGAAGGGAGTGAGTTCTCG         3'
        ||||||o|||||o|| |||
3' AGGTTTCTTCCTTCACTTAA-AGCGGACAGAA 5'
336Arabidopsis thalianaTAGAAGGGAGTGAGTTCTCGalignmentplotGSM278370-4061AT5G38660.2 cdna:known chromosome:TAIR10:5:15470900:15475585:-1 gene:AT5G38660 transcript:AT5G38660.228340.031473
5'     TAGAAGGGAGTGAGTTCTCG         3'
        ||||||o|||||o|| |||
3' AGGTTTCTTCCTTCACTTAA-AGCGGACAGAA 5'
403Arabidopsis thalianaTAGAAGGGAGTGAGTTCTCGalignmentplotGSM278370-4061AT1G08930.2 cdna:known chromosome:TAIR10:1:2873465:2877270:1 gene:AT1G08930 transcript:AT1G08930.2213020.0252.53
5'     TAGAAGGGAGTGAGTTCTCG         3'
        ||| ||||||||||||| |
3' TCACTTCTACCCTCACTCAAGACCTTCTTACG 5'
440Arabidopsis thalianaTAGAAGGGAGTGAGTTCTCGalignmentplotGSM278370-4061AT5G38660.1 cdna:known chromosome:TAIR10:5:15473109:15475552:-1 gene:AT5G38660 transcript:AT5G38660.128010.011473
5'     TAGAAGGGAGTGAGTTCTCG         3'
        ||||||o|||||o|| |||
3' AGGTTTCTTCCTTCACTTAA-AGCGGACAGAA 5'
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