miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


9 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1510Solanum lycopersicumTAGCCAAGGATGACTTGCCTGalignmentplotGSM553688-9229Solyc01g087240.2.1 cdna:novel chromosome:SL2.40:1:73938193:73944527:1 gene:Solyc01g087240.2 transcript:Solyc01g087240.2.101171041412.5
5'     TAGCCAAGGATGACTTGCCTG        3'
        |||||||o|||| |||||||
3' TTGGTTCGGTTCTTACTTAACGGACTCGTATC 5'
1519Solanum lycopersicumTAGCCAAGGATGACTTGCCTGalignmentplotGSM553688-9229Solyc01g006930.2.1 cdna:novel chromosome:SL2.40:1:1506539:1511917:1 gene:Solyc01g006930.2 transcript:Solyc01g006930.2.101328057573.5
5'     TAGCCAAGGATGACTTGCCTG        3'
        |||||||||||| o||||oo
3' ACGATTCGGTTCCTACTTGACGGGTACTATCG 5'
1522Solanum lycopersicumTAGCCAAGGATGACTTGCCTGalignmentplotGSM553688-9229Solyc08g062210.2.1 cdna:novel chromosome:SL2.40:8:47964141:47973284:1 gene:Solyc08g062210.2 transcript:Solyc08g062210.2.101111038382.5
5'     TAGCCAAGGATGACTTGCCTG        3'
       ||||||||||||| o|||| |
3' TTGTATCGGTTCCTACTTGACGG-CTAATAGG 5'
1567Solanum lycopersicumTAGCCAAGGATGACTTGCCTGalignmentplotGSM553689-9230Solyc01g087240.2.1 cdna:novel chromosome:SL2.40:1:73938193:73944527:1 gene:Solyc01g087240.2 transcript:Solyc01g087240.2.10117101411412.5
5'     TAGCCAAGGATGACTTGCCTG        3'
        |||||||o|||| |||||||
3' TTGGTTCGGTTCTTACTTAACGGACTCGTATC 5'
1572Solanum lycopersicumTAGCCAAGGATGACTTGCCTGalignmentplotGSM553689-9230Solyc01g006930.2.1 cdna:novel chromosome:SL2.40:1:1506539:1511917:1 gene:Solyc01g006930.2 transcript:Solyc01g006930.2.1013280.0139393.5
5'     TAGCCAAGGATGACTTGCCTG        3'
        |||||||||||| o||||oo
3' ACGATTCGGTTCCTACTTGACGGGTACTATCG 5'
1574Solanum lycopersicumTAGCCAAGGATGACTTGCCTGalignmentplotGSM553689-9230Solyc08g062210.2.1 cdna:novel chromosome:SL2.40:8:47964141:47973284:1 gene:Solyc08g062210.2 transcript:Solyc08g062210.2.101111080802.5
5'     TAGCCAAGGATGACTTGCCTG        3'
       ||||||||||||| o|||| |
3' TTGTATCGGTTCCTACTTGACGG-CTAATAGG 5'
1620Solanum lycopersicumTAGCCAAGGATGACTTGCCTGalignmentplotGSM553690-9231Solyc01g087240.2.1 cdna:novel chromosome:SL2.40:1:73938193:73944527:1 gene:Solyc01g087240.2 transcript:Solyc01g087240.2.10117102452452.5
5'     TAGCCAAGGATGACTTGCCTG        3'
        |||||||o|||| |||||||
3' TTGGTTCGGTTCTTACTTAACGGACTCGTATC 5'
1624Solanum lycopersicumTAGCCAAGGATGACTTGCCTGalignmentplotGSM553690-9231Solyc01g006930.2.1 cdna:novel chromosome:SL2.40:1:1506539:1511917:1 gene:Solyc01g006930.2 transcript:Solyc01g006930.2.101328027273.5
5'     TAGCCAAGGATGACTTGCCTG        3'
        |||||||||||| o||||oo
3' ACGATTCGGTTCCTACTTGACGGGTACTATCG 5'
1626Solanum lycopersicumTAGCCAAGGATGACTTGCCTGalignmentplotGSM553690-9231Solyc08g062210.2.1 cdna:novel chromosome:SL2.40:8:47964141:47973284:1 gene:Solyc08g062210.2 transcript:Solyc08g062210.2.101111040402.5
5'     TAGCCAAGGATGACTTGCCTG        3'
       ||||||||||||| o|||| |
3' TTGTATCGGTTCCTACTTGACGG-CTAATAGG 5'
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