miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures

Degradomes

9 records found

#	species	miRNA	short reads alignment	plot	library	transcript	category	cleavage position	P-value	fragment abundance	weighted fragment abundance	alignment score	miRNA-target alignment
897	Hordeum vulgare	TATGGGACGGAGGGAGTATCT	alignment	plot	GSE38755_PARE-unique.norm.11-15_DPA	MLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6	1	1113	0	20	2.85714	3.5	5' TATGGGACGGAGGGAGTATCT 3' \| \| \|\|\|\|\|\|\|\|o\|\|\|\|\| \|\| 3' CATAAAAGCCTGCCTCTCTCAT-GAGAGAATA 5'
898	Hordeum vulgare	TATGGGACGGAGGGAGTATCT	alignment	plot	GSE38755_PARE-unique.norm.11-15_DPA	MLOC_43138.1 cdna:novel chromosome:030312v2:5HS:8583045:8586254:-1 gene:MLOC_43138 transcript:MLOC_43138.1	2	1440	0	5	2.5	2	5' TATGGGACGGAGGGAGTATCT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \| 3' TGTAATACCCTGCCTCCCTCACA-ATGCTGAG 5'
902	Hordeum vulgare	TATGGGACGGAGGGAGTATCT	alignment	plot	GSE38755_PARE-unique.norm.11-15_DPA	MLOC_53316.1 cdna:known chromosome:030312v2:1:416027895:416032751:1 gene:MLOC_53316 transcript:MLOC_53316.1	2	3455	0.01	8	0.888889	2.5	5' TATGGGACGGAGGGAGTATCT 3' \| \|\|\|\|\|\|\|\|\|\|o\|\|\|\|\| \|\| 3' AATAAAACCCTGCCTCTCTCAT-GATTAAATC 5'
986	Hordeum vulgare	TATGGGACGGAGGGAGTATCT	alignment	plot	GSE38755_PARE-unique.norm.11-15_DPA	MLOC_69670.1 cdna:known chromosome:030312v2:7HS:11964591:11968606:-1 gene:MLOC_69670 transcript:MLOC_69670.1	2	1636	0.03	8	4	3.5	5' TATGGGACGGAGGGAGTATCT 3' \| \|\|\|o\|\|\|\|\|\|\|\|\|\|\|\|\| 3' AATAAAACCTTGCCTCCCTCATATTATTAAAA 5'
1010	Hordeum vulgare	TATGGGACGGAGGGAGTATCT	alignment	plot	GSE38755_PARE-unique.norm.11-15_DPA	MLOC_53358.5 cdna:known chromosome:030312v2:1:271628792:271630780:-1 gene:MLOC_53358 transcript:MLOC_53358.5	2	1782	0	61	7.625	1.5	5' TATGGGACGGAGGGAGTATCT 3' \|\| \|\|o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' ATAAAT-CCTTGCCTCCCTCATAGACTATCCT 5'
1019	Hordeum vulgare	TATGGGACGGAGGGAGTATCT	alignment	plot	GSE38755_PARE-unique.norm.1-5_DPA	MLOC_78266.1 cdna:novel chromosome:030312v2:3HL:8993115:8994352:-1 gene:MLOC_78266 transcript:MLOC_78266.1	2	1206	0.05	9	4.5	3.5	5' TATGGGACGGAGGGAGTATCT 3' \|\| \|\|o\|\|\|\|\|\|\| \|\|\|\|\| \| 3' ATAAAT-CCTTGCCTCCATCATATAAAAACGT 5'
1101	Hordeum vulgare	TATGGGACGGAGGGAGTATCT	alignment	plot	GSE38755_PARE-unique.norm.1-5_DPA	MLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1	2	1376	0.02	2	2	3	5' TATGGGACGGAGGGAGTATCT 3' \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' AATAAAACCCTGCCTCCCTCATATTGTATCCC 5'
1145	Hordeum vulgare	TATGGGACGGAGGGAGTATCT	alignment	plot	GSE38755_PARE-unique.norm.1-5_DPA	MLOC_72495.1 cdna:known chromosome:030312v2:3:542235938:542240994:1 gene:MLOC_72495 transcript:MLOC_72495.1	2	1797	0.01	10	10	2.5	5' TATGGGACGGAGGGAGTATCT 3' \| \|o\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| 3' AATAAAATCCTGCCTCCCTCAT-GATGCTTTC 5'
1148	Hordeum vulgare	TATGGGACGGAGGGAGTATCT	alignment	plot	GSE38755_PARE-unique.norm.1-5_DPA	MLOC_26643.11 cdna:novel chromosome:030312v2:4:90497928:90501178:1 gene:MLOC_26643 transcript:MLOC_26643.11	2	969	0.03	20	2.85714	3.5	5' TATGGGACGGAGGGAGTATCT 3' \| \| \|\|\|\|\|\|\|\|o\|\|\|\|\| \|\| 3' CATAAAAGCCTGCCTCTCTCAT-GAGAGAATA 5'