miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


3 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1354Physcomitrella patensTATGTTGCAGATTCTTCATTTalignmentplotGSM410805-5251PP1S97_176V6.1 cdna:known scaffold:ASM242v1:DS544986.1:937439:940190:1 gene:PP1S97_176V6 transcript:PP1S97_176V6.10139601591594
5'     TATGTTGCAGATTCTTCATTT        3'
        ||| |||||||||||||  |
3' TATGCTACTACGTCTAAGAAGTTCACGCGCTA 5'
1368Physcomitrella patensTATGTTGCAGATTCTTCATTTalignmentplotGSM410805-5251PP1S262_39V6.1 cdna:novel scaffold:ASM242v1:DS545151.1:281843:284517:1 gene:PP1S262_39V6 transcript:PP1S262_39V6.101085021213.5
5'     TATGTTGCAGATTCTTCATTT        3'
        ||| |||||||||||||o |
3' TATGCTACTACGTCTAAGAAGTGCACGTGTTA 5'
1382Physcomitrella patensTATGTTGCAGATTCTTCATTTalignmentplotGSM410805-5251PP1S105_81V6.1 cdna:known scaffold:ASM242v1:DS544994.1:546983:550759:1 gene:PP1S105_81V6 transcript:PP1S105_81V6.1217470.01552.5
5'     TATGTTGCAGATTCTTCATTT        3'
       |||||||||||o||||||oo
3' AAAGATACAACGTCTGAGAAGTGGTCTAAGTG 5'
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