miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


33 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
899Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_58213.3 cdna:novel chromosome:030312v2:4:491585828:491587718:-1 gene:MLOC_58213 transcript:MLOC_58213.321476030.751
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||||||||||||||
3' GTTAATAAAACCCTGCCTCCCTCATGACATAT 5'
904Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_48886.1 cdna:novel contig:220312v1:morex_contig_331488:20:2271:1 gene:MLOC_48886 transcript:MLOC_48886.121120772
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||| ||||||||||
3' GTGAATAAAACCCTACCTCCCTCATGTTTTAT 5'
938Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_57414.3 cdna:known chromosome:030312v2:4:530999410:531002030:-1 gene:MLOC_57414 transcript:MLOC_57414.3212650165.333333
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| |||o||o| |||||||
3' GTAAATAAAACCTTGTCCCCCTCATCATCTCC 5'
941Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_56507.1 cdna:novel chromosome:030312v2:2:24894587:24898152:1 gene:MLOC_56507 transcript:MLOC_56507.111143040.82
5'     TATTATGGGACGGAGGGAGTA        3'
       o||||||||| |o||||||||
3' GAATGTAATACCCTCCTTCCCTCATTCTTAAT 5'
943Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_65095.2 cdna:novel chromosome:030312v2:4HL:22603070:22604387:-1 gene:MLOC_65095 transcript:MLOC_65095.2111590.01175.666671.5
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| |||||||o||||||||
3' ATGAATAAAACCCTGCTTCCCTCATCATAGAT 5'
945Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_58552.5 cdna:novel chromosome:030312v2:2:475555959:475559690:-1 gene:MLOC_58552 transcript:MLOC_58552.52466040.82
5'     TATTATGGGACGGAGGGAGTA        3'
       o||||||||||o| |||||||
3' GAATGTAATACCCTGTCGCCCTCATTAAAGAT 5'
972Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_6897.4 cdna:known chromosome:030312v2:7:547221774:547225949:1 gene:MLOC_6897 transcript:MLOC_6897.421243012763.52
5'     TATTATGGGACGGAGGGAGTA        3'
       |||||||| |||||||| |||
3' GTATATAATACCGTGCCTCCCCCATCAATGTT 5'
973Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_58213.4 cdna:novel chromosome:030312v2:4:491585850:491587608:-1 gene:MLOC_58213 transcript:MLOC_58213.421469030.751
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||||||||||||||
3' GTTAATAAAACCCTGCCTCCCTCATGACATAT 5'
975Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_72849.6 cdna:known chromosome:030312v2:5:32062940:32069184:-1 gene:MLOC_72849 transcript:MLOC_72849.62870091.82
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| |||||||||||||| |
3' GTGAATAAAACCCTGCCTCCCTCCTATACTGT 5'
987Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_69518.1 cdna:novel chromosome:030312v2:7:523831801:523835346:1 gene:MLOC_69518 transcript:MLOC_69518.121103091.81
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||||||||||||||
3' GTGAATAAAACCCTGCCTCCCTCATAAAGAAA 5'
1000Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_14970.2 cdna:novel chromosome:030312v2:6HL:8061294:8064196:1 gene:MLOC_14970 transcript:MLOC_14970.221597011112.5
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||o|||oo||||||||
3' GTAAATAAAACTCTGTTTCCCTCATGTACTGT 5'
1012Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_52671.1 cdna:known chromosome:030312v2:4:473729757:473733382:-1 gene:MLOC_52671 transcript:MLOC_52671.1212940.0118183
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| |||o||| |o||||||
3' GTTCATAAAACCTTGCGTTCCTCATATATCTT 5'
1025Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_48886.1 cdna:novel contig:220312v1:morex_contig_331488:20:2271:1 gene:MLOC_48886 transcript:MLOC_48886.121120552
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||| ||||||||||
3' GTGAATAAAACCCTACCTCCCTCATGTTTTAT 5'
1056Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_9817.2 cdna:known chromosome:030312v2:3:28801378:28804417:1 gene:MLOC_9817 transcript:MLOC_9817.224670.05102.53.5
5'     TATTATGGGACGGAGGGAGTA        3'
        ||| ||||| |||||o||||
3' GTTCTTAAAACCCTACCTCCTTCATACACAGA 5'
1059Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_51067.6 cdna:novel chromosome:030312v2:7HL:926384:935090:1 gene:MLOC_51067 transcript:MLOC_51067.6229150102.52
5'     TATTATGGGACGGAGGGAGTA        3'
        ||| ||||||||||||||||
3' GTTCTTAAAACCCTGCCTCCCTCATGATTTTA 5'
1061Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_57414.3 cdna:known chromosome:030312v2:4:530999410:531002030:-1 gene:MLOC_57414 transcript:MLOC_57414.3212650.0251.666673
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| |||o||o| |||||||
3' GTAAATAAAACCTTGTCCCCCTCATCATCTCC 5'
1066Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_65523.4 cdna:novel chromosome:030312v2:7HL:6851059:6852521:1 gene:MLOC_65523 transcript:MLOC_65523.421286052.52
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| |o|||||||o||||||
3' GTAAATAAAATCCTGCCTTCCTCATAAGTGTT 5'
1069Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_56507.1 cdna:novel chromosome:030312v2:2:24894587:24898152:1 gene:MLOC_56507 transcript:MLOC_56507.121143081.62
5'     TATTATGGGACGGAGGGAGTA        3'
       o||||||||| |o||||||||
3' GAATGTAATACCCTCCTTCCCTCATTCTTAAT 5'
1070Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_58552.5 cdna:novel chromosome:030312v2:2:475555959:475559690:-1 gene:MLOC_58552 transcript:MLOC_58552.52466081.62
5'     TATTATGGGACGGAGGGAGTA        3'
       o||||||||||o| |||||||
3' GAATGTAATACCCTGTCGCCCTCATTAAAGAT 5'
1081Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_59910.2 cdna:known chromosome:030312v2:2:74913503:74919764:-1 gene:MLOC_59910 transcript:MLOC_59910.222160192.111111
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||||||||||||||
3' GTCAATAAAACCCTGCCTCCCTCATATACTAT 5'
1095Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_52861.1 cdna:novel chromosome:030312v2:3HS:9317676:9318444:-1 gene:MLOC_52861 transcript:MLOC_52861.126630.05773.5
5'     TATTATGGGACGGAGGGAGTA        3'
       |||||o||o| |||o| ||||
3' AATAATAATGCCTTACCTTC-TCATCCAATTA 5'
1099Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1213790771
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||||||||||||||
3' GTTAATAAAACCCTGCCTCCCTCATATTGTAT 5'
1105Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_6897.4 cdna:known chromosome:030312v2:7:547221774:547225949:1 gene:MLOC_6897 transcript:MLOC_6897.4012430271135.52
5'     TATTATGGGACGGAGGGAGTA        3'
       |||||||| |||||||| |||
3' GTATATAATACCGTGCCTCCCCCATCAATGTT 5'
1107Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_1236.6 cdna:novel chromosome:030312v2:7:588501118:588502025:1 gene:MLOC_1236 transcript:MLOC_1236.623960.0482.666673
5'    TATTA-TGGGACGGAGGGAGTA        3'
      o|||| |||o| ||||||||||
3' GATGTAATAACCTTACCTCCCTCATGGTTTTA 5'
1113Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_72849.6 cdna:known chromosome:030312v2:5:32062940:32069184:-1 gene:MLOC_72849 transcript:MLOC_72849.628700.0181.62
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| |||||||||||||| |
3' GTGAATAAAACCCTGCCTCCCTCCTATACTGT 5'
1117Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_34478.1 cdna:novel chromosome:030312v2:5:333694744:333703755:1 gene:MLOC_34478 transcript:MLOC_34478.128550192.111111
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||||||||||||||
3' GTCAATAAAACCCTGCCTCCCTCATCAAACAT 5'
1123Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_79070.1 cdna:novel chromosome:030312v2:4:299437015:299441733:-1 gene:MLOC_79070 transcript:MLOC_79070.1219100442
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||| ||||||||||
3' GTAAATAAAACCCTACCTCCCTCATCATCGAA 5'
1124Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_69518.1 cdna:novel chromosome:030312v2:7:523831801:523835346:1 gene:MLOC_69518 transcript:MLOC_69518.121103081.61
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||||||||||||||
3' GTGAATAAAACCCTGCCTCCCTCATAAAGAAA 5'
1128Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_59824.3 cdna:novel chromosome:030312v2:5:295978958:295982464:-1 gene:MLOC_59824 transcript:MLOC_59824.328170221
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||||||||||||||
3' GTGAATAAAACCCTGCCTCCCTCATTCATTTT 5'
1138Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_43693.4 cdna:novel chromosome:030312v2:1:339618210:339621726:-1 gene:MLOC_43693 transcript:MLOC_43693.421772041.333331.5
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||o|||||||||||||
3' GTGAATAAAACTCTGCCTCCCTCATGGAACGA 5'
1149Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_52585.1 cdna:novel chromosome:030312v2:4:311693944:311697760:1 gene:MLOC_52585 transcript:MLOC_52585.1213880551.5
5'     TATTATGGGACGGAGGGAGTA        3'
       | |||||||||||||||||o|
3' GAATACAATACCCTGCCTCCCTCGTTTACGTC 5'
1153Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_37946.5 cdna:novel chromosome:030312v2:5:188989229:188992900:1 gene:MLOC_37946 transcript:MLOC_37946.521910192.111111.5
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||||o|||||||||
3' GTCAATAAAACCCTGTCTCCCTCATAAACAGA 5'
1158Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_78409.3 cdna:novel chromosome:030312v2:5:560101869:560105791:1 gene:MLOC_78409 transcript:MLOC_78409.3224670192.111111.5
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||||o|||||||||
3' GTCAATAAAACCCTGTCTCCCTCATCATTATT 5'
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