miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




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9 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1670Triticum aestivumTATTATGGGACGGAGGGAGTAalignmentplotGSM911923gi|241988462|gb|AK335720.1|AK335720 HTC Triticum aestivum cDNA, clone: WT013_J19, cultivar: Chinese Spring.233380222
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| | ||||||||||||||
3' GTTCATAAAAGCCTGCCTCCCTCATGTTTGAA 5'
1719Triticum aestivumTATTATGGGACGGAGGGAGTAalignmentplotGSM911923gi|241984777|gb|AK332037.1|AK332037 HTC Triticum aestivum cDNA, clone: WT002_P20, cultivar: Chinese Spring.28040223
5'     TATTATGGGACGGAGGGAGTA        3'
       o||||| |o||o||o||||||
3' TAATGTAATA-CTTGTCTTCCTCATGTTAGGT 5'
1764Triticum aestivumTATTATGGGACGGAGGGAGTAalignmentplotGSM911923gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence.28030442.5
5'     TATTATGGGACGGAGGGAGTA        3'
       || | |||o||||||||||||
3' GCTCATTAAACCTTGCCTCCCTCATCGTCCTT 5'
1777Triticum aestivumTATTATGGGACGGAGGGAGTAalignmentplotGSM911924gi|241987784|gb|AK335041.1|AK335041 HTC Triticum aestivum cDNA, clone: WT011_O10, cultivar: Chinese Spring.116090442.5
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||o||| |||||||||
3' GAATATAAAACTCTGGCTCCCTCATGGATGGT 5'
1805Triticum aestivumTATTATGGGACGGAGGGAGTAalignmentplotGSM911924gi|241985236|gb|AK332496.1|AK332496 HTC Triticum aestivum cDNA, clone: WT004_B23, cultivar: Chinese Spring.227060550.5
5'     TATTATGGGACGGAGGGAGTA        3'
       |||||||||||o|||||||||
3' GAATATAATACCCTGTCTCCCTCATGTATACT 5'
1822Triticum aestivumTATTATGGGACGGAGGGAGTAalignmentplotGSM911924gi|241986916|gb|AK334177.1|AK334177 HTC Triticum aestivum cDNA, clone: WT009_C24, cultivar: Chinese Spring.232850221.5
5'     TATTATGGGACGGAGGGAGTA        3'
       |||||||| ||o|||||||||
3' GTTTATAATACCATGTCTCCCTCATAGAAGAT 5'
1854Triticum aestivumTATTATGGGACGGAGGGAGTAalignmentplotGSM911924gi|241989169|gb|AK336148.1|AK336148 HTC Triticum aestivum cDNA, clone: SET3_F15, cultivar: Chinese Spring.211480631
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||||||||||||||
3' GAATATAAAACCCTGCCTCCCTCATGTTATGT 5'
1910Triticum aestivumTATTATGGGACGGAGGGAGTAalignmentplotGSM911924gi|241990551|gb|AK330708.1|AK330708 HTC Triticum aestivum cDNA, clone: SET5_B19, cultivar: Chinese Spring.232190632.5
5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||||o| |||||||
3' GAATATAAAACCCTGTCCCCCTCATCGTCTGT 5'
1934Triticum aestivumTATTATGGGACGGAGGGAGTAalignmentplotGSM911924gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence.28030.03882.5
5'     TATTATGGGACGGAGGGAGTA        3'
       || | |||o||||||||||||
3' GCTCATTAAACCTTGCCTCCCTCATCGTCCTT 5'
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