miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




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7 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
203Arabidopsis thalianaTCAATGCATTGAAAGTGACTAalignmentplotGSM278335-4060AT1G63330.1 cdna:known chromosome:TAIR10:1:23489840:23491519:1 gene:AT1G63330 transcript:AT1G63330.127750411
5'     TCAATGCATTGAAAGTGACTA        3'
       ||||||||||||| |||||||
3' AGCTAGTTACGTAACTTGCACTGATTTAATCC 5'
281Arabidopsis thalianaTCAATGCATTGAAAGTGACTAalignmentplotGSM278335-4060AT5G41170.1 cdna:known chromosome:TAIR10:5:16478486:16480584:-1 gene:AT5G41170 transcript:AT5G41170.118920411
5'     TCAATGCATTGAAAGTGACTA        3'
       |||||||||||||||||| ||
3' AGCTAGTTACGTAACTTTCACTAATGTAGTCC 5'
394Arabidopsis thalianaTCAATGCATTGAAAGTGACTAalignmentplotGSM278370-4061AT1G63330.1 cdna:known chromosome:TAIR10:1:23489840:23491519:1 gene:AT1G63330 transcript:AT1G63330.10775092.251
5'     TCAATGCATTGAAAGTGACTA        3'
       ||||||||||||| |||||||
3' AGCTAGTTACGTAACTTGCACTGATTTAATCC 5'
412Arabidopsis thalianaTCAATGCATTGAAAGTGACTAalignmentplotGSM278370-4061AT4G24230.1 cdna:known chromosome:TAIR10:4:12566631:12568821:-1 gene:AT4G24230 transcript:AT4G24230.1013160.0240.84
5'     TCAATGCATT-GAAAGTGACTA       3'
       ||||||||o| |||| oo||o|
3' TATTAGTTACGTGATCTTTAGTTGGTCAGGAG 5'
461Arabidopsis thalianaTCAATGCATTGAAAGTGACTAalignmentplotGSM278370-4061AT4G24230.4 cdna:known chromosome:TAIR10:4:12566944:12568767:-1 gene:AT4G24230 transcript:AT4G24230.4012690.0140.84
5'     TCAATGCATT-GAAAGTGACTA       3'
       ||||||||o| |||| oo||o|
3' TATTAGTTACGTGATCTTTAGTTGGTCAGGAG 5'
462Arabidopsis thalianaTCAATGCATTGAAAGTGACTAalignmentplotGSM278370-4061AT5G41170.1 cdna:known chromosome:TAIR10:5:16478486:16480584:-1 gene:AT5G41170 transcript:AT5G41170.11892092.251
5'     TCAATGCATTGAAAGTGACTA        3'
       |||||||||||||||||| ||
3' AGCTAGTTACGTAACTTTCACTAATGTAGTCC 5'
482Arabidopsis thalianaTCAATGCATTGAAAGTGACTAalignmentplotGSM278370-4061AT4G24230.6 cdna:known chromosome:TAIR10:4:12566935:12568754:-1 gene:AT4G24230 transcript:AT4G24230.6012550.0340.84
5'     TCAATGCATT-GAAAGTGACTA       3'
       ||||||||o| |||| oo||o|
3' TATTAGTTACGTGATCTTTAGTTGGTCAGGAG 5'
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