miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


11 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
30Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278334-4059AT1G26890.1 cdna:novel chromosome:TAIR10:1:9317589:9319246:1 gene:AT1G26890 transcript:AT1G26890.127850.0140.01136360.5
5'     TCATCATCATCATCATCTTCT        3'
       |||||||||||||||||o|||
3' TAGTAGTAGTAGTAGTAGTAGGAGATGGAGTA 5'
62Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278334-4059AT1G13220.2 cdna:known chromosome:TAIR10:1:4515699:4520284:1 gene:AT1G13220 transcript:AT1G13220.2133020.05222
5'     TCATCATCATCATCATCTTCT        3'
       ||||||||||| ||||| |||
3' GGGTAGTAGTAGTAGCAGTAGTAGAACTAAAA 5'
67Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278334-4059AT5G08600.1 cdna:known chromosome:TAIR10:5:2786267:2789871:1 gene:AT5G08600 transcript:AT5G08600.123300.0140.01136360
5'     TCATCATCATCATCATCTTCT        3'
       |||||||||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGAAGACTGAGGT 5'
83Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278334-4059AT3G29000.1 cdna:known chromosome:TAIR10:3:11005779:11006414:1 gene:AT3G29000 transcript:AT3G29000.122150.0340.01136361
5'     TCATCATCATCATCATCTTCT        3'
       ||||||||||||||||| |||
3' TAGTAGTAGTAGTAGTAGTAGTAGAAGAACAA 5'
85Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278334-4059AT3G29000.1 cdna:known chromosome:TAIR10:3:11005779:11006414:1 gene:AT3G29000 transcript:AT3G29000.12212040.01136360
5'     TCATCATCATCATCATCTTCT        3'
       |||||||||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGAAGAACAAACC 5'
112Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278334-4059AT1G66620.1 cdna:known chromosome:TAIR10:1:24852806:24854153:-1 gene:AT1G66620 transcript:AT1G66620.129960.0340.01136361
5'     TCATCATCATCATCATCTTCT        3'
       |||||||||||||| ||||||
3' TAGTAGTAGTAGTAGTAGAAGAAGAAGAAGTC 5'
113Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278334-4059AT1G66620.1 cdna:known chromosome:TAIR10:1:24852806:24854153:-1 gene:AT1G66620 transcript:AT1G66620.12999040.01136360
5'     TCATCATCATCATCATCTTCT        3'
       |||||||||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGAAGAAGAAGAA 5'
114Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278334-4059AT1G66620.1 cdna:known chromosome:TAIR10:1:24852806:24854153:-1 gene:AT1G66620 transcript:AT1G66620.1210020.0140.01136361
5'     TCATCATCATCATCATCTTCT        3'
       ||||||||||||||||| |||
3' TAGTAGTAGTAGTAGTAGTAGTAGAAGAAGAA 5'
129Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278334-4059AT5G08600.2 cdna:novel chromosome:TAIR10:5:2786187:2790241:1 gene:AT5G08600 transcript:AT5G08600.22449040.01136360
5'     TCATCATCATCATCATCTTCT        3'
       |||||||||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGAAGACTGAGGT 5'
236Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278335-4060AT5G08600.1 cdna:known chromosome:TAIR10:5:2786267:2789871:1 gene:AT5G08600 transcript:AT5G08600.123300190.05762990
5'     TCATCATCATCATCATCTTCT        3'
       |||||||||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGAAGACTGAGGT 5'
316Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278335-4060AT5G08600.2 cdna:novel chromosome:TAIR10:5:2786187:2790241:1 gene:AT5G08600 transcript:AT5G08600.224490.01190.05762990
5'     TCATCATCATCATCATCTTCT        3'
       |||||||||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGAAGACTGAGGT 5'
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