miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


6 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
505Glycine maxTCATCATCATCATCTTCTTCTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA03G32020.3 cdna:novel chromosome:V1.0:Gm03:39830110:39837209:-1 gene:GLYMA03G32020 transcript:GLYMA03G32020.32824048480
5'     TCATCATCATCATCTTCTTCT        3'
       |||||||||||||||||||||
3' AAGGAGTAGTAGTAGTAGAAGAAGAACGACAC 5'
566Glycine maxTCATCATCATCATCTTCTTCTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA10G04280.1 cdna:known chromosome:V1.0:Gm10:3247992:3250886:-1 gene:GLYMA10G04280 transcript:GLYMA10G04280.129630.0459592
5'     TCATCATCATCATCTTCTTCT        3'
       ||||| ||||||||||| |||
3' AACAAGTAGAAGTAGTAGAAGCAGAAGTAGAA 5'
643Glycine maxTCATCATCATCATCTTCTTCTalignmentplotGSM848964_SC25_unique_seq_countGLYMA03G32020.3 cdna:novel chromosome:V1.0:Gm03:39830110:39837209:-1 gene:GLYMA03G32020 transcript:GLYMA03G32020.32824030300
5'     TCATCATCATCATCTTCTTCT        3'
       |||||||||||||||||||||
3' AAGGAGTAGTAGTAGTAGAAGAAGAACGACAC 5'
811Glycine maxTCATCATCATCATCTTCTTCTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA03G32020.3 cdna:novel chromosome:V1.0:Gm03:39830110:39837209:-1 gene:GLYMA03G32020 transcript:GLYMA03G32020.328270.042642642
5'     TCATCATCATCATCTTCTTCT        3'
       || ||||||||||| ||||||
3' GAGAAGGAGTAGTAGTAGTAGAAGAAGAACGA 5'
812Glycine maxTCATCATCATCATCTTCTTCTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA03G32020.3 cdna:novel chromosome:V1.0:Gm03:39830110:39837209:-1 gene:GLYMA03G32020 transcript:GLYMA03G32020.32824046460
5'     TCATCATCATCATCTTCTTCT        3'
       |||||||||||||||||||||
3' AAGGAGTAGTAGTAGTAGAAGAAGAACGACAC 5'
893Glycine maxTCATCATCATCATCTTCTTCTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA08G06370.1 cdna:novel chromosome:V1.0:Gm08:4519476:4521326:1 gene:GLYMA08G06370 transcript:GLYMA08G06370.1110350.0260.4285712.5
5'     TCATCATCATCATCTTCTTCT        3'
       ||||||||||||o| || |||
3' AAGTAGTAGTAGTAGTGGTAGTAGAAGAAGAA 5'
Entries Per Page
Displaying Page of