miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


4 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
24Arabidopsis thalianaTCATCTTCATCATCATCATCTalignmentplotGSM278334-4059AT1G03530.1 cdna:known chromosome:TAIR10:1:880496:883391:-1 gene:AT1G03530 transcript:AT1G03530.1210240.05100.476191.5
5'     TCATCTTCATCATCATCATCT        3'
       ||||| ||||||||||||||o
3' TAGTAGTAGTAGTAGTAGTAGTAGGAGTAGGA 5'
26Arabidopsis thalianaTCATCTTCATCATCATCATCTalignmentplotGSM278334-4059AT4G38590.1 cdna:known chromosome:TAIR10:4:18036092:18040928:1 gene:AT4G38590 transcript:AT4G38590.1026040.0330.1458332
5'     TCATCTTCATCATCATCATCT        3'
       || ||||| ||||||||||||
3' AAGAAGAAGAAGAAGTAGTAGTAGAAGTAGCA 5'
237Arabidopsis thalianaTCATCTTCATCATCATCATCTalignmentplotGSM278335-4060AT2G21420.1 cdna:known chromosome:TAIR10:2:9169713:9171746:1 gene:AT2G21420 transcript:AT2G21420.1011840.02602.857142
5'     TCATCTTCATCATCATCATCT        3'
       ||||| ||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGTAGTAGCGTTG 5'
370Arabidopsis thalianaTCATCTTCATCATCATCATCTalignmentplotGSM278370-4061AT4G38480.1 cdna:known chromosome:TAIR10:4:18003916:18006140:1 gene:AT4G38480 transcript:AT4G38480.1014080.0230.31.5
5'     TCATCTTCATCATCATCATCT        3'
       ||||| ||||||||||||||o
3' GAGTAGTAGTAGTAGTAGTAGTAGGGGTACTA 5'
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