miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


8 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1524Solanum lycopersicumTCATCTTCATCATCATCTTTAalignmentplotGSM553688-9229Solyc01g090830.2.1 cdna:novel chromosome:SL2.40:1:76291388:76293073:1 gene:Solyc01g090830.2 transcript:Solyc01g090830.2.1027501472.5
5'     TCATCTTCATCATCATCTTTA        3'
       ||||| ||||||||||| |o|
3' AAGTAGTAGTAGTAGTAGTAGTAGTAGGTATA 5'
1526Solanum lycopersicumTCATCTTCATCATCATCTTTAalignmentplotGSM553688-9229Solyc07g044900.1.1 cdna:novel chromosome:SL2.40:7:55287417:55287569:1 gene:Solyc07g044900.1 transcript:Solyc07g044900.1.101010.0270.8753.5
5'     TCATCTTCATCATCATCTTTA        3'
       || || ||||||||| |||o|
3' CAGCAGCAGTAGTAGTAGTCGAAGTTTGAGAG 5'
1532Solanum lycopersicumTCATCTTCATCATCATCTTTAalignmentplotGSM553688-9229Solyc12g008940.1.1 cdna:novel chromosome:SL2.40:12:2247275:2252022:-1 gene:Solyc12g008940.1 transcript:Solyc12g008940.1.129830.0110102
5'     TCATCTTCATCATCATCTTTA        3'
       |||||||||||||||||o|o
3' GAGTAGTAGAAGTAGTAGTAGGAGCAGGAGCA 5'
1554Solanum lycopersicumTCATCTTCATCATCATCTTTAalignmentplotGSM553689-9230Solyc03g053030.1.1 cdna:novel chromosome:SL2.40:3:19757259:19759785:-1 gene:Solyc03g053030.1 transcript:Solyc03g053030.1.101085091.82.5
5'     TCATCTTCATCATCATCTTTA        3'
       ||||| ||||||||||| |o|
3' TAGAAGTAGTAGTAGTAGTAGCAGTAGCAGTA 5'
1561Solanum lycopersicumTCATCTTCATCATCATCTTTAalignmentplotGSM553689-9230Solyc01g020410.1.1 cdna:novel chromosome:SL2.40:1:30103231:30103620:1 gene:Solyc01g020410.1 transcript:Solyc01g020410.1.122390.0240.031251.5
5'     TCATCTTCATCATCATCTTTA        3'
       ||||| |||||||||||||o|
3' TAGTAGTAGTAGTAGTAGTAGAAGTAGTAGTA 5'
1565Solanum lycopersicumTCATCTTCATCATCATCTTTAalignmentplotGSM553689-9230Solyc07g065800.2.1 cdna:novel chromosome:SL2.40:7:64642057:64643753:-1 gene:Solyc07g065800.2 transcript:Solyc07g065800.2.102530.0212122.5
5'     TCATCTTCATCATCATCTTTA        3'
       ||||||||||||||||| |o
3' ACATAGTAGAAGTAGTAGTAGCAGCAGTAGTA 5'
1605Solanum lycopersicumTCATCTTCATCATCATCTTTAalignmentplotGSM553690-9231Solyc01g057520.2.1 cdna:novel chromosome:SL2.40:1:54163130:54174043:1 gene:Solyc01g057520.2 transcript:Solyc01g057520.2.1230520.01441.5
5'     TCATCTTCATCATCATCTTTA        3'
       ||||| |||||||||||||o|
3' CAGGAGTAGTAGTAGTAGTAGAAGTCAAAGGA 5'
1635Solanum lycopersicumTCATCTTCATCATCATCTTTAalignmentplotGSM553690-9231Solyc11g071910.1.1 cdna:novel chromosome:SL2.40:11:52312893:52321825:1 gene:Solyc11g071910.1 transcript:Solyc11g071910.1.1015080.0311112.5
5'     TCATCTTCATCATCATCTTTA        3'
       |||||o||||| |||||o|o|
3' TAGGAGTAGGAGTAGGAGTAGGAGTAGCAGCA 5'
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