miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


9 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
579Glycine maxTCCAAAGGGATCGCATTGATCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA03G36770.1 cdna:novel chromosome:V1.0:Gm03:43630257:43634178:1 gene:GLYMA03G36770 transcript:GLYMA03G36770.12180601471
5'     TCCAAAGGGATCGCATTGATC        3'
       |||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
593Glycine maxTCCAAAGGGATCGCATTGATCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA19G39420.1 cdna:novel chromosome:V1.0:Gm19:46102119:46105994:1 gene:GLYMA19G39420 transcript:GLYMA19G39420.12178801471
5'     TCCAAAGGGATCGCATTGATC        3'
       |||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
687Glycine maxTCCAAAGGGATCGCATTGATCalignmentplotGSM848964_SC25_unique_seq_countGLYMA02G17170.2 cdna:novel chromosome:V1.0:Gm02:15488295:15491581:1 gene:GLYMA02G17170 transcript:GLYMA02G17170.22174102051
5'     TCCAAAGGGATCGCATTGATC        3'
       |||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
696Glycine maxTCCAAAGGGATCGCATTGATCalignmentplotGSM848964_SC25_unique_seq_countGLYMA10G02630.1 cdna:novel chromosome:V1.0:Gm10:1861030:1864010:-1 gene:GLYMA10G02630 transcript:GLYMA10G02630.12216602051
5'     TCCAAAGGGATCGCATTGATC        3'
       |||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
726Glycine maxTCCAAAGGGATCGCATTGATCalignmentplotGSM848964_SC25_unique_seq_countGLYMA03G36770.1 cdna:novel chromosome:V1.0:Gm03:43630257:43634178:1 gene:GLYMA03G36770 transcript:GLYMA03G36770.12180603316.51
5'     TCCAAAGGGATCGCATTGATC        3'
       |||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
738Glycine maxTCCAAAGGGATCGCATTGATCalignmentplotGSM848964_SC25_unique_seq_countGLYMA19G39420.1 cdna:novel chromosome:V1.0:Gm19:46102119:46105994:1 gene:GLYMA19G39420 transcript:GLYMA19G39420.12178803316.51
5'     TCCAAAGGGATCGCATTGATC        3'
       |||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
798Glycine maxTCCAAAGGGATCGCATTGATCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA03G36770.1 cdna:novel chromosome:V1.0:Gm03:43630257:43634178:1 gene:GLYMA03G36770 transcript:GLYMA03G36770.12180601051
5'     TCCAAAGGGATCGCATTGATC        3'
       |||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
809Glycine maxTCCAAAGGGATCGCATTGATCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA19G39420.1 cdna:novel chromosome:V1.0:Gm19:46102119:46105994:1 gene:GLYMA19G39420 transcript:GLYMA19G39420.12178801051
5'     TCCAAAGGGATCGCATTGATC        3'
       |||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
873Glycine maxTCCAAAGGGATCGCATTGATCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA10G02630.1 cdna:novel chromosome:V1.0:Gm10:1861030:1864010:-1 gene:GLYMA10G02630 transcript:GLYMA10G02630.122166020.51
5'     TCCAAAGGGATCGCATTGATC        3'
       |||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
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