miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


3 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1950Vitis viniferaTCCAAAGGGATCGCATTGATCalignmentplotGSM458931-2730VIT_14s0068g01330.t01 cdna:novel chromosome:IGGP_12x:14:25056097:25060280:1 gene:VIT_14s0068g01330 transcript:VIT_14s0068g01330.119370221
5'     TCCAAAGGGATCGCATTGATC        3'
       |||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGTATGA 5'
1962Vitis viniferaTCCAAAGGGATCGCATTGATCalignmentplotGSM458931-2730VIT_07s0104g01320.t01 cdna:novel chromosome:IGGP_12x:7:2351619:2357500:1 gene:VIT_07s0104g01320 transcript:VIT_07s0104g01320.t01115180221
5'     TCCAAAGGGATCGCATTGATC        3'
       |||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
2029Vitis viniferaTCCAAAGGGATCGCATTGATCalignmentplotGSM458931-2730VIT_14s0030g01240.t01 cdna:novel chromosome:IGGP_12x:14:5731297:5735020:1 gene:VIT_14s0030g01240 transcript:VIT_14s0030g01240.t0118600221
5'     TCCAAAGGGATCGCATTGATC        3'
       |||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
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