miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




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4 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
19Arabidopsis thalianaTCCAAAGGGATCGCATTGATCCalignmentplotGSM278334-4059AT3G26810.1 cdna:known chromosome:TAIR10:3:9867845:9870640:1 gene:AT3G26810 transcript:AT3G26810.1020100662
5'     TCCAAAGGGATCGCATTGATCC       3'
       |||||||||||||||||| | |
3' CTGTAGGTTTCCCTAGCGTAACAAAGTATGAA 5'
37Arabidopsis thalianaTCCAAAGGGATCGCATTGATCCalignmentplotGSM278334-4059AT1G12820.1 cdna:known chromosome:TAIR10:1:4368760:4371293:-1 gene:AT1G12820 transcript:AT1G12820.1018950882
5'     TCCAAAGGGATCGCATTGATCC       3'
       |||||||||||||||||| | |
3' CTGTAGGTTTCCCTAGCGTAACAAAGCATGGA 5'
178Arabidopsis thalianaTCCAAAGGGATCGCATTGATCCalignmentplotGSM278335-4060AT1G12820.1 cdna:known chromosome:TAIR10:1:4368760:4371293:-1 gene:AT1G12820 transcript:AT1G12820.101895014142
5'     TCCAAAGGGATCGCATTGATCC       3'
       |||||||||||||||||| | |
3' CTGTAGGTTTCCCTAGCGTAACAAAGCATGGA 5'
373Arabidopsis thalianaTCCAAAGGGATCGCATTGATCCalignmentplotGSM278370-4061AT1G12820.1 cdna:known chromosome:TAIR10:1:4368760:4371293:-1 gene:AT1G12820 transcript:AT1G12820.101895023232
5'     TCCAAAGGGATCGCATTGATCC       3'
       |||||||||||||||||| | |
3' CTGTAGGTTTCCCTAGCGTAACAAAGCATGGA 5'
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