miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


6 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
908Hordeum vulgareTCCACAGGCTTTCTTGAACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_67201.1 cdna:known chromosome:030312v2:4:31377429:31381415:-1 gene:MLOC_67201 transcript:MLOC_67201.127220289.333332
5'     TCCACAGGCTTTCTTGAACTG        3'
       |||||| |||||||||||| |
3' CGGAAGGTGTACGAAAGAACTTG-CTACCGCA 5'
916Hordeum vulgareTCCACAGGCTTTCTTGAACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_64055.3 cdna:novel chromosome:030312v2:7HS:3568107:3569803:-1 gene:MLOC_64055 transcript:MLOC_64055.318310102.51
5'     TCCACAGGCTTTCTTGAACTG        3'
       ||||||||||||||||||| |
3' ACCAAGGTGTCCGAAAGAACTTGCCAAGAACG 5'
1028Hordeum vulgareTCCACAGGCTTTCTTGAACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_67201.1 cdna:known chromosome:030312v2:4:31377429:31381415:-1 gene:MLOC_67201 transcript:MLOC_67201.1172209732.33332
5'     TCCACAGGCTTTCTTGAACTG        3'
       |||||| |||||||||||| |
3' CGGAAGGTGTACGAAAGAACTTG-CTACCGCA 5'
1041Hordeum vulgareTCCACAGGCTTTCTTGAACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_64055.3 cdna:novel chromosome:030312v2:7HS:3568107:3569803:-1 gene:MLOC_64055 transcript:MLOC_64055.30831025964.751
5'     TCCACAGGCTTTCTTGAACTG        3'
       ||||||||||||||||||| |
3' ACCAAGGTGTCCGAAAGAACTTGCCAAGAACG 5'
1116Hordeum vulgareTCCACAGGCTTTCTTGAACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_80060.2 cdna:novel chromosome:030312v2:5HL:22774025:22775272:-1 gene:MLOC_80060 transcript:MLOC_80060.2085304723.51
5'     TCCACAGGCTTTCTTGAACTG        3'
       ||||||||||||||||||| |
3' AGGAAGGTGTCCGAAAGAACTTGCCGGCGCCG 5'
1137Hordeum vulgareTCCACAGGCTTTCTTGAACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_75225.1 cdna:novel chromosome:030312v2:3HL:14015810:14018279:-1 gene:MLOC_75225 transcript:MLOC_75225.1076801271273.5
5'     TCCACAGGCTTTCTTGAACTG        3'
       ||||||o|||| ||||| ||
3' GAGGAGGTGTTCGAA-GAACTCGAGTGGTTAG 5'
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