miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


12 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1641Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911923gi|32351003|gb|AY290730.1|AY290730 PLN Triticum aestivum ubiquitin-like mRNA, partial sequence.2272038382
5'     TCCGGAGGGATTCCCTCCTTG        3'
       ||||| ||||| |||||||||
3' GACCAGGCCGCCCTACGGGAGGAACAGGACCT 5'
1647Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911923gi|155965253|gb|EU081898.1|EU081898 PLN Triticum aestivum polyubiquitin (WubiG) mRNA, partial cds.2895016132.22.5
5'     TCCGGAGGGATTCCCTCCTTG        3'
       ||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'
1648Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911923gi|155965253|gb|EU081898.1|EU081898 PLN Triticum aestivum polyubiquitin (WubiG) mRNA, partial cds.21123016132.22.5
5'     TCCGGAGGGATTCCCTCCTTG        3'
       ||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'
1669Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911923gi|33325639|gb|AF517839.1|AF517839 PLN Triticum aestivum ubiquitin protein mRNA, partial cds.2107074742
5'     TCCGGAGGGATTCCCTCCTTG        3'
       ||||| ||||| |||||||||
3' GACCAGGCCCCCCTACGGGAGGAACAGGACCT 5'
1685Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911923gi|21815|gb|X56803.1|X56803 PLN T.aestivum L. mRNA for ubiquitin.21090.02194.752.5
5'     TCCGGAGGGATTCCCTCCTTG        3'
       ||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'
1706Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911923gi|126544299|gb|AY297059.2|AY297059 PLN Triticum aestivum ubiquitin (WUB1) mRNA, complete cds.2107016132.22.5
5'     TCCGGAGGGATTCCCTCCTTG        3'
       ||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'
1782Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911924gi|32351003|gb|AY290730.1|AY290730 PLN Triticum aestivum ubiquitin-like mRNA, partial sequence.2272052522
5'     TCCGGAGGGATTCCCTCCTTG        3'
       ||||| ||||| |||||||||
3' GACCAGGCCGCCCTACGGGAGGAACAGGACCT 5'
1792Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911924gi|155965253|gb|EU081898.1|EU081898 PLN Triticum aestivum polyubiquitin (WubiG) mRNA, partial cds.211230.0224749.42.5
5'     TCCGGAGGGATTCCCTCCTTG        3'
       ||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'
1794Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911924gi|155965253|gb|EU081898.1|EU081898 PLN Triticum aestivum polyubiquitin (WubiG) mRNA, partial cds.2895024749.42.5
5'     TCCGGAGGGATTCCCTCCTTG        3'
       ||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'
1814Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911924gi|33325639|gb|AF517839.1|AF517839 PLN Triticum aestivum ubiquitin protein mRNA, partial cds.210701021022
5'     TCCGGAGGGATTCCCTCCTTG        3'
       ||||| ||||| |||||||||
3' GACCAGGCCCCCCTACGGGAGGAACAGGACCT 5'
1843Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911924gi|21815|gb|X56803.1|X56803 PLN T.aestivum L. mRNA for ubiquitin.21090.02317.752.5
5'     TCCGGAGGGATTCCCTCCTTG        3'
       ||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'
1869Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911924gi|126544299|gb|AY297059.2|AY297059 PLN Triticum aestivum ubiquitin (WUB1) mRNA, complete cds.2107024749.42.5
5'     TCCGGAGGGATTCCCTCCTTG        3'
       ||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'
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