miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


5 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
13Arabidopsis thalianaTCCGGAGGGATTCCTTCCTTalignmentplotGSM278334-4059AT4G05320.5 cdna:known chromosome:TAIR10:4:2718170:2720133:1 gene:AT4G05320 transcript:AT4G05320.526480.0150.8333330
5'     TCCGGAGGGATTCCTTCCTT         3'
       ||||||||||||||||||||
3' GACCAGGCCTCCCTAAGGAAGGAATAGGACCT 5'
149Arabidopsis thalianaTCCGGAGGGATTCCTTCCTTalignmentplotGSM278335-4060AT4G05320.5 cdna:known chromosome:TAIR10:4:2718170:2720133:1 gene:AT4G05320 transcript:AT4G05320.524200.0130.63
5'     TCCGGAGGGATTCCTTCCTT         3'
       ||||||||o|| ||o|| ||
3' GACCAGGCCTCCTTATGGGAGAAACAGAACCT 5'
187Arabidopsis thalianaTCCGGAGGGATTCCTTCCTTalignmentplotGSM278335-4060AT4G05320.6 cdna:known chromosome:TAIR10:4:2718187:2719988:1 gene:AT4G05320 transcript:AT4G05320.624030.0130.63
5'     TCCGGAGGGATTCCTTCCTT         3'
       ||||||||o|| ||o|| ||
3' GACCAGGCCTCCTTATGGGAGAAACAGAACCT 5'
233Arabidopsis thalianaTCCGGAGGGATTCCTTCCTTalignmentplotGSM278335-4060AT3G52590.1 cdna:known chromosome:TAIR10:3:19505629:19506932:1 gene:AT3G52590 transcript:AT3G52590.121460441
5'     TCCGGAGGGATTCCTTCCTT         3'
       ||||||||||||||||| ||
3' GACTAGGCCTCCCTAAGGAAGAAACAGAACCT 5'
348Arabidopsis thalianaTCCGGAGGGATTCCTTCCTTalignmentplotGSM278370-4061AT5G03240.2 cdna:known chromosome:TAIR10:5:771752:773165:-1 gene:AT5G03240 transcript:AT5G03240.22604051.250
5'     TCCGGAGGGATTCCTTCCTT         3'
       ||||||||||||||||||||
3' GACTAGGCCTCCCTAAGGAAGGAACAGGACCT 5'
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