miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


8 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
151Arabidopsis thalianaTCGGACCAGGCTTCATTCCCCalignmentplotGSM278335-4060AT1G52150.1 cdna:known chromosome:TAIR10:1:19409711:19414678:-1 gene:AT1G52150 transcript:AT1G52150.1212790.01227.333332.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAGAC 5'
296Arabidopsis thalianaTCGGACCAGGCTTCATTCCCCalignmentplotGSM278335-4060AT1G30490.1 cdna:known chromosome:TAIR10:1:10796135:10800961:-1 gene:AT1G30490 transcript:AT1G30490.1280605431.52.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
303Arabidopsis thalianaTCGGACCAGGCTTCATTCCCCalignmentplotGSM278335-4060AT2G34710.1 cdna:known chromosome:TAIR10:2:14639323:14644273:-1 gene:AT2G34710 transcript:AT2G34710.1288105532.52.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
307Arabidopsis thalianaTCGGACCAGGCTTCATTCCCCalignmentplotGSM278335-4060AT3G48610.1 cdna:known chromosome:TAIR10:3:18011545:18014082:-1 gene:AT3G48610 transcript:AT3G48610.1216210.04223.5
5'    TCGG-ACCAGGCTTCATTCCCC        3'
      |||| ||||o|||||||| ||
3' AATAGCCGTGGTTCGAAGTAACGGAGAAATGA 5'
339Arabidopsis thalianaTCGGACCAGGCTTCATTCCCCalignmentplotGSM278370-4061AT1G52150.1 cdna:known chromosome:TAIR10:1:19409711:19414678:-1 gene:AT1G52150 transcript:AT1G52150.12127904113.66672.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAGAC 5'
472Arabidopsis thalianaTCGGACCAGGCTTCATTCCCCalignmentplotGSM278370-4061AT1G30490.1 cdna:known chromosome:TAIR10:1:10796135:10800961:-1 gene:AT1G30490 transcript:AT1G30490.1280602311.52.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
480Arabidopsis thalianaTCGGACCAGGCTTCATTCCCCalignmentplotGSM278370-4061AT2G34710.1 cdna:known chromosome:TAIR10:2:14639323:14644273:-1 gene:AT2G34710 transcript:AT2G34710.1288102816.52.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
484Arabidopsis thalianaTCGGACCAGGCTTCATTCCCCalignmentplotGSM278370-4061AT3G48610.1 cdna:known chromosome:TAIR10:3:18011545:18014082:-1 gene:AT3G48610 transcript:AT3G48610.1216210.01223.5
5'    TCGG-ACCAGGCTTCATTCCCC        3'
      |||| ||||o|||||||| ||
3' AATAGCCGTGGTTCGAAGTAACGGAGAAATGA 5'
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