miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


15 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1490Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553688-9229Solyc11g069470.1.1 cdna:novel chromosome:SL2.40:11:51150759:51156271:1 gene:Solyc11g069470.1 transcript:Solyc11g069470.1.10571021212.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGC 5'
1493Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553688-9229Solyc12g044410.1.1 cdna:novel chromosome:SL2.40:12:44793673:44801092:1 gene:Solyc12g044410.1 transcript:Solyc12g044410.1.105590316105.3332.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAAAC 5'
1499Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553688-9229Solyc08g066500.2.1 cdna:novel chromosome:SL2.40:8:52415522:52421037:-1 gene:Solyc08g066500.2 transcript:Solyc08g066500.2.105770316105.3332.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5'
1502Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553688-9229Solyc02g024070.2.1 cdna:novel chromosome:SL2.40:2:15627267:15633567:1 gene:Solyc02g024070.2 transcript:Solyc02g024070.2.12819026262.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTCGA 5'
1503Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553688-9229Solyc02g069830.2.1 cdna:novel chromosome:SL2.40:2:34234662:34242222:-1 gene:Solyc02g069830.2 transcript:Solyc02g069830.2.12629020202.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTAAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
1540Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553689-9230Solyc11g069470.1.1 cdna:novel chromosome:SL2.40:11:51150759:51156271:1 gene:Solyc11g069470.1 transcript:Solyc11g069470.1.10571028282.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGC 5'
1544Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553689-9230Solyc12g044410.1.1 cdna:novel chromosome:SL2.40:12:44793673:44801092:1 gene:Solyc12g044410.1 transcript:Solyc12g044410.1.105590419139.6672.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAAAC 5'
1548Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553689-9230Solyc02g024070.2.1 cdna:novel chromosome:SL2.40:2:15627267:15633567:1 gene:Solyc02g024070.2 transcript:Solyc02g024070.2.12819018182.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTCGA 5'
1550Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553689-9230Solyc02g069830.2.1 cdna:novel chromosome:SL2.40:2:34234662:34242222:-1 gene:Solyc02g069830.2 transcript:Solyc02g069830.2.10629037372.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTAAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
1556Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553689-9230Solyc08g066500.2.1 cdna:novel chromosome:SL2.40:8:52415522:52421037:-1 gene:Solyc08g066500.2 transcript:Solyc08g066500.2.105770419139.6672.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5'
1596Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553690-9231Solyc11g069470.1.1 cdna:novel chromosome:SL2.40:11:51150759:51156271:1 gene:Solyc11g069470.1 transcript:Solyc11g069470.1.10571032322.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGC 5'
1598Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553690-9231Solyc12g044410.1.1 cdna:novel chromosome:SL2.40:12:44793673:44801092:1 gene:Solyc12g044410.1 transcript:Solyc12g044410.1.105590515171.6672.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAAAC 5'
1600Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553690-9231Solyc02g024070.2.1 cdna:novel chromosome:SL2.40:2:15627267:15633567:1 gene:Solyc02g024070.2 transcript:Solyc02g024070.2.10819011112.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTCGA 5'
1603Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553690-9231Solyc02g069830.2.1 cdna:novel chromosome:SL2.40:2:34234662:34242222:-1 gene:Solyc02g069830.2 transcript:Solyc02g069830.2.10629032322.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTAAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
1607Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553690-9231Solyc08g066500.2.1 cdna:novel chromosome:SL2.40:8:52415522:52421037:-1 gene:Solyc08g066500.2 transcript:Solyc08g066500.2.105770515171.6672.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5'
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