miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


4 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1958Vitis viniferaTCGGACCAGGCTTCATTCCCCalignmentplotGSM458931-2730VIT_04s0008g03250.t01 cdna:novel chromosome:IGGP_12x:4:2700630:2709554:-1 gene:VIT_04s0008g03250 transcript:VIT_04s0008g03250.t025650212.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5'
1982Vitis viniferaTCGGACCAGGCTTCATTCCCCalignmentplotGSM458931-2730VIT_13s0019g04320.t01 cdna:novel chromosome:IGGP_12x:13:5642849:5655110:1 gene:VIT_13s0019g04320 transcript:VIT_13s0019g04320.t015800222.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCTTAGA 5'
2020Vitis viniferaTCGGACCAGGCTTCATTCCCCalignmentplotGSM458931-2730VIT_06s0004g02800.t01 cdna:novel chromosome:IGGP_12x:6:3508029:3516493:-1 gene:VIT_06s0004g02800 transcript:VIT_06s0004g02800.t015790.01222.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGA 5'
2041Vitis viniferaTCGGACCAGGCTTCATTCCCCalignmentplotGSM458931-2730VIT_10s0003g04670.t01 cdna:novel chromosome:IGGP_12x:10:8333667:8341190:1 gene:VIT_10s0003g04670 transcript:VIT_10s0003g04670.t015930222.5
5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
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