miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


5 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1379Physcomitrella patensTCTCCCTCAAAGGCTTCCAalignmentplotGSM410805-5251PP1S248_7V6.1 cdna:known scaffold:ASM242v1:DS545137.1:70918:75836:-1 gene:PP1S248_7V6 transcript:PP1S248_7V6.103728020103
5'     TCTCCCTCAAAGGCTTCCA          3'
        ||||||||||||| |||
3' TCGTTGAGGGAGTTTCCGTAGGAAGTGAAGCC 5'
1385Physcomitrella patensTCTCCCTCAAAGGCTTCCAalignmentplotGSM410805-5251PP1S112_154V6.1 cdna:known scaffold:ASM242v1:DS545001.1:733541:736966:1 gene:PP1S112_154V6 transcript:PP1S112_154V6.1218280.02222
5'     TCTCCCTCAAAGGCTTCCA          3'
       |||||||||||||| |||
3' TGTTAGAGGGAGTTTCCGTAGGGGTAGGGCGT 5'
1390Physcomitrella patensTCTCCCTCAAAGGCTTCCAalignmentplotGSM410805-5251PP1S65_138V6.1 cdna:novel scaffold:ASM242v1:DS544954.1:780636:785346:-1 gene:PP1S65_138V6 transcript:PP1S65_138V6.119020.02333.5
5'     TCTCCCTCAAAGGCTTCCA          3'
       ||| |||||||o|| |||
3' ACCTAGA-GGAGTTTTCGCAGGGAGGCAGGGT 5'
1417Physcomitrella patensTCTCCCTCAAAGGCTTCCAalignmentplotGSM410805-5251PP1S48_150V6.1 cdna:novel scaffold:ASM242v1:DS544937.1:1186304:1186936:-1 gene:PP1S48_150V6 transcript:PP1S48_150V6.101660.01333
5'     TCTCCCTCAAAGGCTTCCA          3'
       ||||||||||||  ||||
3' TAATAGAGGGAGTTTCGAAAGGCAGATGAACG 5'
1460Physcomitrella patensTCTCCCTCAAAGGCTTCCAalignmentplotGSM410805-5251PP1S78_141V6.1 cdna:known scaffold:ASM242v1:DS544967.1:860994:863829:1 gene:PP1S78_141V6 transcript:PP1S78_141V6.102288020103
5'     TCTCCCTCAAAGGCTTCCA          3'
        ||||||||||||| |||
3' TCGTTGAGGGAGTTTCCGTAGGAAGTGATGCC 5'
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