miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


5 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1968Vitis viniferaTCTTGCTCAAATGAGTGTTCCAalignmentplotGSM458931-2730VIT_00s0341g00050.t01 cdna:novel chromosome:IGGP_12x:Un:24415587:24430691:-1 gene:VIT_00s0341g00050 transcript:VIT_00s0341g00050111270221.5
5'     TCTTGCTCAAATGAGTGTTCCA       3'
       ||||||||||||||| o|||||
3' TCAAAGAACGAGTTTACTCTTAAGGTCATCAA 5'
1972Vitis viniferaTCTTGCTCAAATGAGTGTTCCAalignmentplotGSM458931-2730VIT_17s0000g08480.t01 cdna:novel chromosome:IGGP_12x:17:9703427:9704324:-1 gene:VIT_17s0000g08480 transcript:VIT_17s0000g08480.t13190221
5'     TCTTGCTCAAATGAGTGTTCCA       3'
       | ||||||||||||||||||||
3' TCGAAAAACGAGTTTACTCACAAGGTTACCAA 5'
2003Vitis viniferaTCTTGCTCAAATGAGTGTTCCAalignmentplotGSM458931-2730VIT_14s0066g01220.t01 cdna:novel chromosome:IGGP_12x:14:27708124:27709246:-1 gene:VIT_14s0066g01220 transcript:VIT_14s0066g0122013190.01221
5'     TCTTGCTCAAATGAGTGTTCCA       3'
       | ||||||||||||||||||||
3' TCGAAAAACGAGTTTACTCACAAGGTCATCAA 5'
2024Vitis viniferaTCTTGCTCAAATGAGTGTTCCAalignmentplotGSM458931-2730VIT_09s0002g01380.t01 cdna:novel chromosome:IGGP_12x:9:1161830:1162708:1 gene:VIT_09s0002g01380 transcript:VIT_09s0002g01380.t0114110221.5
5'     TCTTGCTCAAATGAGTGTTCCA       3'
       ||||||||||||||| o|||||
3' TAAAAGAACGAGTTTACTCTTAAGGTCATCAA 5'
2037Vitis viniferaTCTTGCTCAAATGAGTGTTCCAalignmentplotGSM458931-2730VIT_14s0006g03100.t01 cdna:novel chromosome:IGGP_12x:14:21607164:21608162:1 gene:VIT_14s0006g03100 transcript:VIT_14s0006g03100.11390221.5
5'     TCTTGCTCAAATGAGTGTTCCA       3'
       |||||||||| |||||o|||||
3' TTAAAGAACGAGTTCACTCATAAGGTACTAGA 5'
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