miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


6 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1488Solanum lycopersicumTGAAGCTGCCAGCATGATCTalignmentplotGSM553688-9229Solyc02g037530.2.1 cdna:known chromosome:SL2.40:2:21756443:21766699:1 gene:Solyc02g037530.2 transcript:Solyc02g037530.2.10229106283143
5'     TGAAGCTGCCAGCATGATCT         3'
         ||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5'
1518Solanum lycopersicumTGAAGCTGCCAGCATGATCTalignmentplotGSM553688-9229Solyc03g031970.2.1 cdna:known chromosome:SL2.40:3:8739906:8747501:1 gene:Solyc03g031970.2 transcript:Solyc03g031970.2.10229406283143
5'     TGAAGCTGCCAGCATGATCT         3'
         ||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5'
1539Solanum lycopersicumTGAAGCTGCCAGCATGATCTalignmentplotGSM553689-9230Solyc02g037530.2.1 cdna:known chromosome:SL2.40:2:21756443:21766699:1 gene:Solyc02g037530.2 transcript:Solyc02g037530.2.102291016180.53
5'     TGAAGCTGCCAGCATGATCT         3'
         ||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5'
1571Solanum lycopersicumTGAAGCTGCCAGCATGATCTalignmentplotGSM553689-9230Solyc03g031970.2.1 cdna:known chromosome:SL2.40:3:8739906:8747501:1 gene:Solyc03g031970.2 transcript:Solyc03g031970.2.102294016180.53
5'     TGAAGCTGCCAGCATGATCT         3'
         ||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5'
1593Solanum lycopersicumTGAAGCTGCCAGCATGATCTalignmentplotGSM553690-9231Solyc02g037530.2.1 cdna:known chromosome:SL2.40:2:21756443:21766699:1 gene:Solyc02g037530.2 transcript:Solyc02g037530.2.1022910136683
5'     TGAAGCTGCCAGCATGATCT         3'
         ||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5'
1623Solanum lycopersicumTGAAGCTGCCAGCATGATCTalignmentplotGSM553690-9231Solyc03g031970.2.1 cdna:known chromosome:SL2.40:3:8739906:8747501:1 gene:Solyc03g031970.2 transcript:Solyc03g031970.2.1022940136683
5'     TGAAGCTGCCAGCATGATCT         3'
         ||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5'
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