miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures

Degradomes

8 records found

#	species	miRNA	short reads alignment	plot	library	transcript	category	cleavage position	P-value	fragment abundance	weighted fragment abundance	alignment score	miRNA-target alignment
913	Hordeum vulgare	TGACAGAAGAGAGTGAGCACA	alignment	plot	GSE38755_PARE-unique.norm.11-15_DPA	MLOC_11199.7 cdna:known chromosome:030312v2:6HS:3424827:3430372:-1 gene:MLOC_11199 transcript:MLOC_11199.7	0	2791	0.02	20	2.85714	3	5' TGACAGAAGAGAGTGAGCACA 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| 3' ACGAACTGTCTTCTCTCTCTCGTACGACTTCT 5'
958	Hordeum vulgare	TGACAGAAGAGAGTGAGCACA	alignment	plot	GSE38755_PARE-unique.norm.11-15_DPA	MLOC_37841.2 cdna:known chromosome:030312v2:7:214318191:214323478:1 gene:MLOC_37841 transcript:MLOC_37841.2	2	638	0	6	3	1	5' TGACAGAAGAGAGTGAGCACA 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| 3' CTCGACTGTCTTCTCTCTCTCGTGTCAGGCTC 5'
970	Hordeum vulgare	TGACAGAAGAGAGTGAGCACA	alignment	plot	GSE38755_PARE-unique.norm.11-15_DPA	MLOC_52321.2 cdna:known chromosome:030312v2:3:518753339:518756802:-1 gene:MLOC_52321 transcript:MLOC_52321.2	0	690	0	84	21	1	5' TGACAGAAGAGAGTGAGCACA 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| 3' ACAGACTGTCTTCTCTCTCTCGTGTCAACACC 5'
995	Hordeum vulgare	TGACAGAAGAGAGTGAGCACA	alignment	plot	GSE38755_PARE-unique.norm.11-15_DPA	MLOC_13032.1 cdna:novel contig:220312v1:morex_contig_1564635:477:3263:1 gene:MLOC_13032 transcript:MLOC_13032.1	2	750	0.03	5	5	3	5' TGACAGAAGAGAGTGAGCACA 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| 3' ACGTACTGTCTTCTCTCCCTCGTACGAATCCA 5'
1033	Hordeum vulgare	TGACAGAAGAGAGTGAGCACA	alignment	plot	GSE38755_PARE-unique.norm.1-5_DPA	MLOC_11199.7 cdna:known chromosome:030312v2:6HS:3424827:3430372:-1 gene:MLOC_11199 transcript:MLOC_11199.7	0	2791	0	52	7.42857	3	5' TGACAGAAGAGAGTGAGCACA 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| 3' ACGAACTGTCTTCTCTCTCTCGTACGACTTCT 5'
1088	Hordeum vulgare	TGACAGAAGAGAGTGAGCACA	alignment	plot	GSE38755_PARE-unique.norm.1-5_DPA	MLOC_37841.2 cdna:known chromosome:030312v2:7:214318191:214323478:1 gene:MLOC_37841 transcript:MLOC_37841.2	0	638	0	45	22.5	1	5' TGACAGAAGAGAGTGAGCACA 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| 3' CTCGACTGTCTTCTCTCTCTCGTGTCAGGCTC 5'
1094	Hordeum vulgare	TGACAGAAGAGAGTGAGCACA	alignment	plot	GSE38755_PARE-unique.norm.1-5_DPA	MLOC_61297.1 cdna:known chromosome:030312v2:7:224856072:224859310:-1 gene:MLOC_61297 transcript:MLOC_61297.1	0	787	0	14	4.66667	1	5' TGACAGAAGAGAGTGAGCACA 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| 3' CTCAACTGTCTTCTCTCTCTCGTGTCGACCTC 5'
1104	Hordeum vulgare	TGACAGAAGAGAGTGAGCACA	alignment	plot	GSE38755_PARE-unique.norm.1-5_DPA	MLOC_52321.2 cdna:known chromosome:030312v2:3:518753339:518756802:-1 gene:MLOC_52321 transcript:MLOC_52321.2	0	690	0	87	21.75	1	5' TGACAGAAGAGAGTGAGCACA 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| 3' ACAGACTGTCTTCTCTCTCTCGTGTCAACACC 5'