miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


5 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1505Solanum lycopersicumTGACAGAAGAGAGTGAGCACAalignmentplotGSM553688-9229Solyc12g038520.1.1 cdna:novel chromosome:SL2.40:12:35933880:35935930:-1 gene:Solyc12g038520.1 transcript:Solyc12g038520.1.12981052.51
5'     TGACAGAAGAGAGTGAGCACA        3'
       ||||||||||||| |||||||
3' CTCTACTGTCTTCTCTCTCTCGTGTCGGTCTC 5'
1508Solanum lycopersicumTGACAGAAGAGAGTGAGCACAalignmentplotGSM553688-9229Solyc07g062980.2.1 cdna:novel chromosome:SL2.40:7:62823040:62824209:-1 gene:Solyc07g062980.2 transcript:Solyc07g062980.2.10448048482.5
5'     TGACAGAAGAGAGTGAGCACA        3'
       ||||||||||||||o||||
3' CCCGACTGTCTTCTCTCATTCGTAAAGTAGGT 5'
1551Solanum lycopersicumTGACAGAAGAGAGTGAGCACAalignmentplotGSM553689-9230Solyc12g038520.1.1 cdna:novel chromosome:SL2.40:12:35933880:35935930:-1 gene:Solyc12g038520.1 transcript:Solyc12g038520.1.129810211
5'     TGACAGAAGAGAGTGAGCACA        3'
       ||||||||||||| |||||||
3' CTCTACTGTCTTCTCTCTCTCGTGTCGGTCTC 5'
1564Solanum lycopersicumTGACAGAAGAGAGTGAGCACAalignmentplotGSM553689-9230Solyc07g062980.2.1 cdna:novel chromosome:SL2.40:7:62823040:62824209:-1 gene:Solyc07g062980.2 transcript:Solyc07g062980.2.10448051512.5
5'     TGACAGAAGAGAGTGAGCACA        3'
       ||||||||||||||o||||
3' CCCGACTGTCTTCTCTCATTCGTAAAGTAGGT 5'
1628Solanum lycopersicumTGACAGAAGAGAGTGAGCACAalignmentplotGSM553690-9231Solyc05g012040.2.1 cdna:novel chromosome:SL2.40:5:5268986:5273711:1 gene:Solyc05g012040.2 transcript:Solyc05g012040.2.1214290221
5'     TGACAGAAGAGAGTGAGCACA        3'
       ||||||||||||| |||||||
3' CCCGACTGTCTTCTCTCTCTCGTGTTCTCCTC 5'
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