miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


7 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1485Solanum lycopersicumTGATTGAGCCGTGCCAATATCalignmentplotGSM553688-9229Solyc08g078800.1.1 cdna:novel chromosome:SL2.40:8:59683241:59684665:-1 gene:Solyc08g078800.1 transcript:Solyc08g078800.1.10407045450.5
5'     TGATTGAGCCGTGCCAATATC        3'
       |||||||||||o|||||||||
3' GACAACTAACTCGGCGCGGTTATAGTAAACGC 5'
1501Solanum lycopersicumTGATTGAGCCGTGCCAATATCalignmentplotGSM553688-9229Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.121581016160.5
5'     TGATTGAGCCGTGCCAATATC        3'
       |||||||||||o|||||||||
3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5'
1536Solanum lycopersicumTGATTGAGCCGTGCCAATATCalignmentplotGSM553689-9230Solyc08g078800.1.1 cdna:novel chromosome:SL2.40:8:59683241:59684665:-1 gene:Solyc08g078800.1 transcript:Solyc08g078800.1.10407092920.5
5'     TGATTGAGCCGTGCCAATATC        3'
       |||||||||||o|||||||||
3' GACAACTAACTCGGCGCGGTTATAGTAAACGC 5'
1543Solanum lycopersicumTGATTGAGCCGTGCCAATATCalignmentplotGSM553689-9230Solyc02g085600.1.1 cdna:novel chromosome:SL2.40:2:43007859:43009469:1 gene:Solyc02g085600.1 transcript:Solyc02g085600.1.125960442
5'     TGATTGAGCCGTGCCAATATC        3'
       |||||||| ||||||| ||||
3' GGCAACTAACTCCGCACGGTCATAGTGTACAC 5'
1546Solanum lycopersicumTGATTGAGCCGTGCCAATATCalignmentplotGSM553689-9230Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.101581073730.5
5'     TGATTGAGCCGTGCCAATATC        3'
       |||||||||||o|||||||||
3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5'
1588Solanum lycopersicumTGATTGAGCCGTGCCAATATCalignmentplotGSM553690-9231Solyc08g078800.1.1 cdna:novel chromosome:SL2.40:8:59683241:59684665:-1 gene:Solyc08g078800.1 transcript:Solyc08g078800.1.10407020200.5
5'     TGATTGAGCCGTGCCAATATC        3'
       |||||||||||o|||||||||
3' GACAACTAACTCGGCGCGGTTATAGTAAACGC 5'
1606Solanum lycopersicumTGATTGAGCCGTGCCAATATCalignmentplotGSM553690-9231Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.1215810550.5
5'     TGATTGAGCCGTGCCAATATC        3'
       |||||||||||o|||||||||
3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5'
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