miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


3 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1351Physcomitrella patensTGCACTGCCTCTTCCCTGGCTalignmentplotGSM410805-5251PP1S40_48V6.6 cdna:known scaffold:ASM242v1:DS544929.1:397418:401180:-1 gene:PP1S40_48V6 transcript:PP1S40_48V6.601991050784.53
5'     TGCACTGCCTCTTCCCTGGCT        3'
       |||| ||||||||||| | ||
3' GTGTACGTAACGGAGAAGGGTC-GAGTGTGGC 5'
1365Physcomitrella patensTGCACTGCCTCTTCCCTGGCTalignmentplotGSM410805-5251PP1S77_277V6.1 cdna:known scaffold:ASM242v1:DS544966.1:1461739:1463836:-1 gene:PP1S77_277V6 transcript:PP1S77_277V6.122580552
5'     TGCACTGCCTCTTCCCTGGCT        3'
       o|||||||||||||||||| o
3' GGTAGCGTGACGGAGAAGGGACCCGGTAAACA 5'
1408Physcomitrella patensTGCACTGCCTCTTCCCTGGCTalignmentplotGSM410805-5251PP1S227_44V6.2 cdna:known scaffold:ASM242v1:DS545116.1:306574:308835:1 gene:PP1S227_44V6 transcript:PP1S227_44V6.224560.05165.333332.5
5'     TGCACTGCCTCTTCCCTG-GCT       3'
       |||||||| ||||||||| ||o
3' CGTAACGTGACGTAGAAGGGACTCGGTACCGC 5'
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