miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


3 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1026Hordeum vulgareTGCAGTTGCTGCCTCAAGCTTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_22069.3 cdna:novel chromosome:030312v2:3HL:6136111:6138507:1 gene:MLOC_22069 transcript:MLOC_22069.327830.02121.714292.5
5'     TGCAGTTGCTGCCTCAAGCTT        3'
       oo|||||||||||||| |||o
3' AAAGGTGTCAACGACGGAGT-CGAGTACTTCT 5'
1125Hordeum vulgareTGCAGTTGCTGCCTCAAGCTTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_73623.1 cdna:known chromosome:030312v2:7:575064402:575067960:-1 gene:MLOC_73623 transcript:MLOC_73623.1211190.05157.52.5
5'     TGCAGTTGCTGCCTCAAGCTT        3'
       ||||| |||||||||| ||o|
3' TAGAACGTCTACGACGGAGT-CGGAGTGTTAG 5'
1152Hordeum vulgareTGCAGTTGCTGCCTCAAGCTTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_22069.6 cdna:novel chromosome:030312v2:3HL:6136431:6138520:1 gene:MLOC_22069 transcript:MLOC_22069.627170.02121.714292.5
5'     TGCAGTTGCTGCCTCAAGCTT        3'
       oo|||||||||||||| |||o
3' AAAGGTGTCAACGACGGAGT-CGAGTACTTCT 5'
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