miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


6 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1206Medicago truncatulaTGCCAAAGGAGATTTGCCCTGalignmentplotGSM643817_GDN-4gi|13783492|gb|BG648380.1|BG648380 EST509999 HOGA Medicago truncatula cDNA clone pHOGA-19J15 5' end, mRNA sequence239061.51.5
5'     TGCCAAAGGAGATTTGCCCTG        3'
       ||||||||||||||||||| o
3' ATTTACGGTTTCCTCTAAACGGGTTGTCCTGT 5'
1230Medicago truncatulaTGCCAAAGGAGATTTGCCCTGalignmentplotGSM643817_GDN-4gi|13781151|gb|BG646039.1|BG646039 EST507658 KV3 Medicago truncatula cDNA clone pKV3-48E12 5' end, mRNA sequence263061.51.5
5'     TGCCAAAGGAGATTTGCCCTG        3'
       ||||||||||||||||||| o
3' ATTTACGGTTTCCTCTAAACGGGTTGTCCTGT 5'
1245Medicago truncatulaTGCCAAAGGAGATTTGCCCTGalignmentplotGSM643817_GDN-4gi|20281110|gb|BQ144051.1|BQ144051 NF028G06DT1F1049 Drought Medicago truncatula cDNA clone NF028G06DT 5', mRNA sequence2167061.51.5
5'     TGCCAAAGGAGATTTGCCCTG        3'
       ||||||||||||||||||| o
3' ATTTACGGTTTCCTCTAAACGGGTTGTCCTGT 5'
1256Medicago truncatulaTGCCAAAGGAGATTTGCCCTGalignmentplotGSM643817_GDN-4gi|13779528|gb|BG644416.1|BG644416 EST506035 KV3 Medicago truncatula cDNA clone pKV3-37A6 5' end, mRNA sequence0156035351.5
5'     TGCCAAAGGAGATTTGCCCTG        3'
       ||||||||o|||||||||| |
3' GACTACGGTTTCTTCTAAACGGG-CGGTCCTA 5'
1264Medicago truncatulaTGCCAAAGGAGATTTGCCCTGalignmentplotGSM643817_GDN-4gi|13779528|gb|BG644416.1|BG644416 EST506035 KV3 Medicago truncatula cDNA clone pKV3-37A6 5' end, mRNA sequence21020992.5
5'     TGCCAAAGGAGATTTGCCCTG        3'
       ||||||||||||| ||||| o
3' TTTCACGGTTTCCTCTATACGGGTTAACGCTT 5'
1294Medicago truncatulaTGCCAAAGGAGATTTGCCCTGalignmentplotGSM643817_GDN-4gi|260520380|gb|GT136216.1|GT136216 METBL11TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence05210882
5'     TGCCAAAGGAGATTTGCCCTG        3'
       |||||||||||||||| || |
3' GAAAACGGTTTCCTCTAAACAGGTCATGTGTC 5'
Entries Per Page
Displaying Page of