miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


10 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1497Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553688-9229Solyc06g075150.2.1 cdna:known chromosome:SL2.40:6:43020594:43023443:1 gene:Solyc06g075150.2 transcript:Solyc06g075150.2.101502038381
5'     TGCCTGGCTCCCTGTATGCCA        3'
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3' TTGTACGGACCGAGGGACATACGGACGTCATT 5'
1507Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553688-9229Solyc11g013470.1.1 cdna:novel chromosome:SL2.40:11:6496469:6499311:-1 gene:Solyc11g013470.1 transcript:Solyc11g013470.1.10554079791.5
5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGGCGTCCTT 5'
1525Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553688-9229Solyc11g069500.1.1 cdna:known chromosome:SL2.40:11:51188434:51191569:-1 gene:Solyc11g069500.1 transcript:Solyc11g069500.1.101313032321
5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGACGTCACT 5'
1547Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553689-9230Solyc06g075150.2.1 cdna:known chromosome:SL2.40:6:43020594:43023443:1 gene:Solyc06g075150.2 transcript:Solyc06g075150.2.101502020201
5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||||||||
3' TTGTACGGACCGAGGGACATACGGACGTCATT 5'
1562Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553689-9230Solyc11g013470.1.1 cdna:novel chromosome:SL2.40:11:6496469:6499311:-1 gene:Solyc11g013470.1 transcript:Solyc11g013470.1.1055401651651.5
5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGGCGTCCTT 5'
1576Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553689-9230Solyc09g007810.2.1 cdna:novel chromosome:SL2.40:9:1332643:1335760:-1 gene:Solyc09g007810.2 transcript:Solyc09g007810.2.121608015150.5
5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||o||||||
3' TCGTACGGACCGAGGGACGTACGGTCGTCCCC 5'
1579Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553689-9230Solyc11g069500.1.1 cdna:known chromosome:SL2.40:11:51188434:51191569:-1 gene:Solyc11g069500.1 transcript:Solyc11g069500.1.101313043431
5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGACGTCACT 5'
1602Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553690-9231Solyc06g075150.2.1 cdna:known chromosome:SL2.40:6:43020594:43023443:1 gene:Solyc06g075150.2 transcript:Solyc06g075150.2.101502040401
5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||||||||
3' TTGTACGGACCGAGGGACATACGGACGTCATT 5'
1617Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553690-9231Solyc11g013470.1.1 cdna:novel chromosome:SL2.40:11:6496469:6499311:-1 gene:Solyc11g013470.1 transcript:Solyc11g013470.1.1055404734731.5
5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGGCGTCCTT 5'
1632Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553690-9231Solyc11g069500.1.1 cdna:known chromosome:SL2.40:11:51188434:51191569:-1 gene:Solyc11g069500.1 transcript:Solyc11g069500.1.101313028281
5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGACGTCACT 5'
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