miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


4 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1959Vitis viniferaTGCCTGGCTCCCTGTATGCCAalignmentplotGSM458931-2730VIT_13s0019g04380.t01 cdna:novel chromosome:IGGP_12x:13:5744428:5747932:-1 gene:VIT_13s0019g04380 transcript:VIT_13s0019g04380.t115180221
5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGACGTCCTT 5'
1994Vitis viniferaTGCCTGGCTCCCTGTATGCCAalignmentplotGSM458931-2730VIT_08s0040g01810.t01 cdna:novel chromosome:IGGP_12x:8:12924098:12929097:1 gene:VIT_08s0040g01810 transcript:VIT_08s0040g01810.t221380210.5
5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||o||||||
3' TCGTACGGACCGAGGGACGTACGGTCGTCCTT 5'
2009Vitis viniferaTGCCTGGCTCCCTGTATGCCAalignmentplotGSM458931-2730VIT_06s0004g02750.t01 cdna:novel chromosome:IGGP_12x:6:3443777:3447902:1 gene:VIT_06s0004g02750 transcript:VIT_06s0004g02750.t01213320211
5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGACGTCCTC 5'
2038Vitis viniferaTGCCTGGCTCCCTGTATGCCAalignmentplotGSM458931-2730VIT_18s0001g04180.t01 cdna:novel chromosome:IGGP_12x:18:3749619:3757678:1 gene:VIT_18s0001g04180 transcript:VIT_18s0001g04180.t016860220.5
5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||o||||||
3' TAGAACGGACCGAGGGACGTACGGTCGTCCTT 5'
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