miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


14 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
558Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA05G00930.1 cdna:novel chromosome:V1.0:Gm05:542676:544662:-1 gene:GLYMA05G00930 transcript:GLYMA05G00930.128830234.62.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
       ||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGGCTTAG 5'
565Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA06G21020.1 cdna:known chromosome:V1.0:Gm06:17431771:17433898:1 gene:GLYMA06G21020 transcript:GLYMA06G21020.1211060.02234.62.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
       ||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGTCTTAG 5'
577Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA04G33270.1 cdna:novel chromosome:V1.0:Gm04:38776490:38778616:-1 gene:GLYMA04G33270 transcript:GLYMA04G33270.1210660.04234.63.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
       ||||||||||||| ||||o
3' CCTAACCTCTTCGTCCCATGCATTCGGCATAG 5'
627Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA17G10970.1 cdna:known chromosome:V1.0:Gm17:8247753:8249783:1 gene:GLYMA17G10970 transcript:GLYMA17G10970.129180.02234.62.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
       ||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGGCATAG 5'
707Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA05G00930.1 cdna:novel chromosome:V1.0:Gm05:542676:544662:-1 gene:GLYMA05G00930 transcript:GLYMA05G00930.128830.01377.42.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
       ||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGGCTTAG 5'
709Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA08G18470.1 cdna:known chromosome:V1.0:Gm08:13867947:13872796:1 gene:GLYMA08G18470 transcript:GLYMA08G18470.1073001262
5'     TGGAGAAGCAGGGCACGTGCA        3'
       |||||||||||||||| |||
3' TTTTACCTCTTCGTCCCGTGAACGAGTTTGAG 5'
715Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA06G21020.1 cdna:known chromosome:V1.0:Gm06:17431771:17433898:1 gene:GLYMA06G21020 transcript:GLYMA06G21020.1211060377.42.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
       ||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGTCTTAG 5'
737Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA12G26190.1 cdna:novel chromosome:V1.0:Gm12:29514536:29517365:1 gene:GLYMA12G26190 transcript:GLYMA12G26190.12879020202
5'     TGGAGAAGCAGGGCACGTGCA        3'
       |||||||o||||o|||||||
3' TACCACCTCTTTGTCCTGTGCACGAGGGAAAC 5'
755Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA13G34950.1 cdna:novel chromosome:V1.0:Gm13:36439653:36442281:1 gene:GLYMA13G34950 transcript:GLYMA13G34950.121066073.52
5'     TGGAGAAGCAGGGCACGTGCA        3'
       |||||||o||||o|||||||
3' TAACACCTCTTTGTCCTGTGCACGAGGAAAAA 5'
767Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA15G40510.1 cdna:known chromosome:V1.0:Gm15:47503232:47508060:-1 gene:GLYMA15G40510 transcript:GLYMA15G40510.1173401262
5'     TGGAGAAGCAGGGCACGTGCA        3'
       |||||||||||||||| |||
3' TTTTACCTCTTCGTCCCGTGAACGAGTTTGAG 5'
785Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA17G10970.1 cdna:known chromosome:V1.0:Gm17:8247753:8249783:1 gene:GLYMA17G10970 transcript:GLYMA17G10970.129180.01377.42.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
       ||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGGCATAG 5'
788Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA12G35530.1 cdna:novel chromosome:V1.0:Gm12:38654911:38657537:-1 gene:GLYMA12G35530 transcript:GLYMA12G35530.12995073.52
5'     TGGAGAAGCAGGGCACGTGCA        3'
       |||||||o||||o|||||||
3' TAACACCTCTTTGTCCTGTGCACGAGGAAAAA 5'
828Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848965_Cot100_unique_seq_countGLYMA05G00930.2 cdna:novel chromosome:V1.0:Gm05:542676:544662:-1 gene:GLYMA05G00930 transcript:GLYMA05G00930.2288901022.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
       ||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGGCTTAG 5'
889Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848965_Cot100_unique_seq_countGLYMA06G21020.1 cdna:known chromosome:V1.0:Gm06:17431771:17433898:1 gene:GLYMA06G21020 transcript:GLYMA06G21020.1211060.011022.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
       ||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGTCTTAG 5'
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