miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




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7 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1185Medicago truncatulaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM643817_GDN-4gi|209563603|gb|GE344778.1|GE344778 MEUAG72TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence21840.0550.2380953.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
       |o||||| ||o|||||o|||
3' CAAAATCTCTT-GTTCCGTGTACGACTGTTGT 5'
1186Medicago truncatulaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM643817_GDN-4gi|11915228|gb|BF650098.1|BF650098 NF087H02EC1F1026 Elicited cell culture Medicago truncatula cDNA clone NF087H02EC 5', mRNA seq04220225.52
5'     TGGAGAAGCAGGGCACGTGCA        3'
       |||||||||||||||| |||
3' TTGTACCTCTTCGTCCCGTGAACGAGTATAAG 5'
1215Medicago truncatulaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM643817_GDN-4gi|20293470|gb|BQ156411.1|BQ156411 NF092E09IR1F1071 Irradiated Medicago truncatula cDNA clone NF092E09IR 5', mRNA sequence21240.0150.2380952.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
       |o||||| ||o|||||o||||
3' CAAAATCTCTT-GTTCCGTGTACGTCTATCGT 5'
1281Medicago truncatulaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM643817_GDN-4gi|13371358|gb|BG452564.1|BG452564 NF078F03LF1F1028 Developing leaf Medicago truncatula cDNA clone NF078F03LF 5', mRNA sequence13550314
5'     TGGAGAAGCAGGGCACGTGCA        3'
       |||||||||||   | |||||
3' GTTCACCTCTTCGTCAGTT-CACGTTTGTCAT 5'
1284Medicago truncatulaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM643817_GDN-4gi|14982448|gb|BI308121.1|BI308121 EST529531 GPOD Medicago truncatula cDNA clone pGPOD-2M23 5' end, mRNA sequence0751012123
5'     TGGAGAAGCAGGGCACGTGCA        3'
       ||||||||||||o|||||o
3' CTCAACCTCTTCGTCCTGTGCATTCGACTTAG 5'
1288Medicago truncatulaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM643817_GDN-4gi|9675757|gb|AL376005.1|AL376005 MtBB20F03R1 MtBB Medicago truncatula cDNA clone MtBB20F03 T7, mRNA sequence21770.03613.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
        |o||||| |||||||||| |
3' CGAATCTTCTTCTTCCCGTGCAC-TGTGGTAG 5'
1346Medicago truncatulaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM643817_GDN-4gi|89245334|gb|DY617121.1|DY617121 AC2814 NOLLY Medicago truncatula cDNA 5', mRNA sequence11650333
5'     TGGAGAAGCAGGGCACGTGCA        3'
       |||||||||| oo||| ||||
3' CTTAACCTCTTCGTGTTGTGAACGTCGTTCTC 5'
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