miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


3 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1954Vitis viniferaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM458931-2730VIT_14s0108g01070.t01 cdna:novel chromosome:IGGP_12x:14:29705236:29707523:1 gene:VIT_14s0108g01070 transcript:VIT_14s0108g01070.18260222
5'     TGGAGAAGCAGGGCACGTGCA        3'
       |||||||||||| |||||| |
3' ACCAACCTCTTCGTCCAGTGCAC-TCTGCTCA 5'
1992Vitis viniferaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM458931-2730VIT_19s0027g00230.t01 cdna:novel chromosome:IGGP_12x:19:18785292:18790096:-1 gene:VIT_19s0027g00230 transcript:VIT_19s0027g0023016380222.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
       o||||||||||||||| |||
3' TATAGCCTCTTCGTCCCGTGAACGAGTATAAG 5'
2001Vitis viniferaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM458931-2730VIT_17s0000g06400.t01 cdna:novel chromosome:IGGP_12x:17:6977372:6979197:1 gene:VIT_17s0000g06400 transcript:VIT_17s0000g06400.t019390221
5'     TGGAGAAGCAGGGCACGTGCA        3'
       ||||||||||||||||||| |
3' CCCAACCTCTTCGTCCCGTGCAC-TCCACTAA 5'
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