miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures

Degradomes

6 records found

#	species	miRNA	short reads alignment	plot	library	transcript	category	cleavage position	P-value	fragment abundance	weighted fragment abundance	alignment score	miRNA-target alignment
1014	Hordeum vulgare	TGTACTCCCTCCGTTCCTAAA	alignment	plot	GSE38755_PARE-unique.norm.11-15_DPA	MLOC_67470.1 cdna:known chromosome:030312v2:2:576417261:576422103:-1 gene:MLOC_67470 transcript:MLOC_67470.1	2	1986	0.01	18	18	3	5' TGTACTCCCTCCGTTCCTAAA 3' \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| 3' AAGATGATGAGGGAGGCA-GGATTTTATTCNN 5'
1027	Hordeum vulgare	TGTACTCCCTCCGTTCCTAAA	alignment	plot	GSE38755_PARE-unique.norm.1-5_DPA	MLOC_63462.2 cdna:known chromosome:030312v2:2:53816820:53821954:1 gene:MLOC_63462 transcript:MLOC_63462.2	2	1825	0.02	10	5	3	5' TGTACTCCCTCCGTTCCTAAA 3' \| \|\|\|\|\|\|\|\|\|\|o\|o\|\| \|\|\| 3' TAATAGATGAGGGAGGTAGGGTTTTATTCACA 5'
1050	Hordeum vulgare	TGTACTCCCTCCGTTCCTAAA	alignment	plot	GSE38755_PARE-unique.norm.1-5_DPA	MLOC_17833.1 cdna:novel chromosome:030312v2:5:530617343:530619382:1 gene:MLOC_17833 transcript:MLOC_17833.1	2	1227	0.02	7	3.5	3	5' TGTACTCCCTCCGTTCCTAAA 3' \|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \|\|\| 3' TTGTACATGATGAAGGCAAGGTTTTATATACT 5'
1082	Hordeum vulgare	TGTACTCCCTCCGTTCCTAAA	alignment	plot	GSE38755_PARE-unique.norm.1-5_DPA	MLOC_5347.1 cdna:novel chromosome:030312v2:2HS:10116351:10121217:-1 gene:MLOC_5347 transcript:MLOC_5347.1	2	1789	0.02	11	11	3	5' TGTACTCCCTCCGTTCCTAAA 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \| \| 3' AAGTACATGAGGGAGGCTAGG-TATAATTAAC 5'
1085	Hordeum vulgare	TGTACTCCCTCCGTTCCTAAA	alignment	plot	GSE38755_PARE-unique.norm.1-5_DPA	MLOC_9522.1 cdna:novel chromosome:030312v2:1:124351345:124353037:1 gene:MLOC_9522 transcript:MLOC_9522.1	2	711	0.02	15	15	3.5	5' TGTACTCCCTCCGTTCC-TAAA 3' \|\|\|\|\|\|\|\|\|\|\|\|o\|\| \|\|\|\| 3' TCTATGATGAGGGAGGCAGGGTATTTTCAGGG 5'
1092	Hordeum vulgare	TGTACTCCCTCCGTTCCTAAA	alignment	plot	GSE38755_PARE-unique.norm.1-5_DPA	MLOC_61642.2 cdna:known chromosome:030312v2:7:555938286:555947384:1 gene:MLOC_61642 transcript:MLOC_61642.2	2	1446	0	9	9	2	5' TGTACTCCCTCCGTTCCTAAA 3' \|o\|\|\|\|\|\|\|\|\|\|\|\|o\|\| \|\|\| 3' TACAATATGAGGGAGGCAGGGTTTTATTCACA 5'