miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




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6 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1242Medicago truncatulaTTACCGATTCCACCCATTCCTAalignmentplotGSM643817_GDN-4gi|14879956|gb|BI271442.1|BI271442 NF051F06FL1F1059 Developing flower Medicago truncatula cDNA clone NF051F06FL 5', mRNA sequenc0620.0112124
5'     TTACCGATTCCACCCATTCCTA       3'
       o| ||o|||||| |||||| ||
3' AATGGAAGGTTAAGGTAGGTAAG-ATTTTTGG 5'
1253Medicago truncatulaTTACCGATTCCACCCATTCCTAalignmentplotGSM643817_GDN-4gi|14879902|gb|BI271414.1|BI271414 NF050F09FL1F1079 Developing flower Medicago truncatula cDNA clone NF050F09FL 5', mRNA sequenc0176025253
5'     TTACCGATTCCACCCATTCCTA       3'
       || ||o||||||||||| ||o|
3' GATAAAAGGTTAAGGTGGGTACGGGTTTCCGT 5'
1278Medicago truncatulaTTACCGATTCCACCCATTCCTAalignmentplotGSM643817_GDN-4gi|11935465|gb|AW696680.2|AW696680 NF109F07ST1F1062 Developing stem Medicago truncatula cDNA clone NF109F07ST 5', mRNA sequence21230.03223.5
5'     TTACCGATTCCACCCATTCCTA       3'
       || || |||||||||||o|| |
3' ACAGAAGGGATAAGGTGGGTAGGG-TGTTTAA 5'
1313Medicago truncatulaTTACCGATTCCACCCATTCCTAalignmentplotGSM643817_GDN-4gi|83665171|gb|DW015579.1|DW015579 EST1224540 MTY Medicago truncatula cDNA clone MTYA712, mRNA sequence0411096484
5'     TTACCGATTCCACCCATTCCTA       3'
       o| ||o||||||||||o| |o|
3' AATTGA-GGTTAAGGTGGGTGAAGGTTGTGAC 5'
1322Medicago truncatulaTTACCGATTCCACCCATTCCTAalignmentplotGSM643817_GDN-4gi|11936378|gb|AW693660.2|AW693660 NF066G08ST1F1000 Developing stem Medicago truncatula cDNA clone NF066G08ST 5', mRNA sequence021002352352
5'     TTACCGATTCCACCCATTCCTA       3'
       ||||||| |||||||||o||o|
3' ACAAAATGGCTTAGGTGGGTAGGGGTTCCTAC 5'
1349Medicago truncatulaTTACCGATTCCACCCATTCCTAalignmentplotGSM643817_GDN-4gi|14879467|gb|BI271199.1|BI271199 NF050F01FL1F1015 Developing flower Medicago truncatula cDNA clone NF050F01FL 5', mRNA sequenc0990108710872
5'     TTACCGATTCCACCCATTCCTA       3'
       ||||||| ||||||||| ||||
3' ACAAAATGGCTTAGGTGGGTACGGATTCCTAC 5'
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