miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures

Degradomes

8 records found

#	species	miRNA	short reads alignment	plot	library	transcript	category	cleavage position	P-value	fragment abundance	weighted fragment abundance	alignment score	miRNA-target alignment
915	Hordeum vulgare	TTATTTTGGGACGGAGGGAGT	alignment	plot	GSE38755_PARE-unique.norm.11-15_DPA	MLOC_34489.2 cdna:known chromosome:030312v2:1H:14965287:14969538:1 gene:MLOC_34489 transcript:MLOC_34489.2	2	1238	0	11	5.5	2.5	5' TTATTTTGGGACGGAGGGAGT 3' \|o\|\|\|o\|\|\|\|\|\| \|\|o\|\|\|\|\| 3' AGTGAGTAAGACCCTGACTTCCTCATGTTTTA 5'
937	Hordeum vulgare	TTATTTTGGGACGGAGGGAGT	alignment	plot	GSE38755_PARE-unique.norm.11-15_DPA	MLOC_62418.1 cdna:known chromosome:030312v2:1:405153016:405156721:-1 gene:MLOC_62418 transcript:MLOC_62418.1	2	151	0	3	3	2	5' TTATTTTGGGACGGAGGGAGT 3' \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' CTGATATAAATCCCTGCCTCCCTCATCTAGGA 5'
996	Hordeum vulgare	TTATTTTGGGACGGAGGGAGT	alignment	plot	GSE38755_PARE-unique.norm.11-15_DPA	MLOC_10723.3 cdna:novel chromosome:030312v2:2:605996561:605997943:-1 gene:MLOC_10723 transcript:MLOC_10723.3	1	911	0	10	10	0	5' TTATTTTGGGACGGAGGGAGT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' AGTGAATAAAACCCTGCCTCCCTCATATAATC 5'
1004	Hordeum vulgare	TTATTTTGGGACGGAGGGAGT	alignment	plot	GSE38755_PARE-unique.norm.11-15_DPA	MLOC_20818.1 cdna:known chromosome:030312v2:7:322531768:322533960:1 gene:MLOC_20818 transcript:MLOC_20818.1	2	104	0	18	18	0	5' TTATTTTGGGACGGAGGGAGT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TGTGAATAAAACCCTGCCTCCCTCATCATAAT 5'
1011	Hordeum vulgare	TTATTTTGGGACGGAGGGAGT	alignment	plot	GSE38755_PARE-unique.norm.11-15_DPA	MLOC_34489.5 cdna:novel chromosome:030312v2:1H:14966757:14969573:1 gene:MLOC_34489 transcript:MLOC_34489.5	2	2758	0	11	5.5	2.5	5' TTATTTTGGGACGGAGGGAGT 3' \|o\|\|\|o\|\|\|\|\|\| \|\|o\|\|\|\|\| 3' AGTGAGTAAGACCCTGACTTCCTCATGTTTTA 5'
1068	Hordeum vulgare	TTATTTTGGGACGGAGGGAGT	alignment	plot	GSE38755_PARE-unique.norm.1-5_DPA	MLOC_58552.5 cdna:novel chromosome:030312v2:2:475555959:475559690:-1 gene:MLOC_58552 transcript:MLOC_58552.5	0	467	0.02	10	2	4	5' TTATTTTGGGACGGAGGGAGT 3' o\|\|\| \|\|\|\|\|\|o\| \|\|\|\|\|\| 3' AGAATGTAATACCCTGTCGCCCTCATTAAAGA 5'
1102	Hordeum vulgare	TTATTTTGGGACGGAGGGAGT	alignment	plot	GSE38755_PARE-unique.norm.1-5_DPA	MLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1	2	1380	0	2	2	0	5' TTATTTTGGGACGGAGGGAGT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' AGTTAATAAAACCCTGCCTCCCTCATATTGTA 5'
1112	Hordeum vulgare	TTATTTTGGGACGGAGGGAGT	alignment	plot	GSE38755_PARE-unique.norm.1-5_DPA	MLOC_11772.4 cdna:novel chromosome:030312v2:3:409997449:410002809:1 gene:MLOC_11772 transcript:MLOC_11772.4	2	3165	0	10	5	2	5' TTATTTTGGGACGGAGGGAGT 3' \|\|\|o\|\|\|\|o\|\| \|\|\|\|\|\|\|\|\| 3' AGTGAATGAAACTCTACCTCCCTCATCTTGTG 5'