miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


9 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1987Vitis viniferaTTCCACAGCTTTCTTGAACTalignmentplotGSM458931-2730VIT_09s0002g01350.t01 cdna:novel chromosome:IGGP_12x:9:1135177:1136542:1 gene:VIT_09s0002g01350 transcript:VIT_09s0002g01350.t0104060222
5'    TTCCACA-GCTTTCTTGAACT         3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAAACG 5'
2000Vitis viniferaTTCCACAGCTTTCTTGAACTalignmentplotGSM458931-2730VIT_02s0025g04910.t01 cdna:novel chromosome:IGGP_12x:2:4421526:4422809:1 gene:VIT_02s0025g04910 transcript:VIT_02s0025g04910.t0115800.01222
5'    TTCCACA-GCTTTCTTGAACT         3'
      ||||||| ||||||||||||
3' TCGAAGGTGTACGAAAGAACTTGCGACTGCCG 5'
2011Vitis viniferaTTCCACAGCTTTCTTGAACTalignmentplotGSM458931-2730VIT_16s0098g01080.t01 cdna:novel chromosome:IGGP_12x:16:21346622:21349185:-1 gene:VIT_16s0098g01080 transcript:VIT_16s0098g0108016920222
5'    TTCCACA-GCTTTCTTGAACT         3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCCCAGCCG 5'
2016Vitis viniferaTTCCACAGCTTTCTTGAACTalignmentplotGSM458931-2730VIT_16s0039g01450.t01 cdna:novel chromosome:IGGP_12x:16:975988:979958:1 gene:VIT_16s0039g01450 transcript:VIT_16s0039g01450.t0113980222
5'    TTCCACA-GCTTTCTTGAACT         3'
      ||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'
2018Vitis viniferaTTCCACAGCTTTCTTGAACTalignmentplotGSM458931-2730VIT_02s0012g02250.t01 cdna:novel chromosome:IGGP_12x:2:9137736:9153313:-1 gene:VIT_02s0012g02250 transcript:VIT_02s0012g02250.t011390.04222
5'     TTCCACAGCTTTCTTGAACT         3'
       |||||||o||||||oo|||o
3' GTGGAAGGTGTTGAAAGAGTTTGGTAAGGTTT 5'
2025Vitis viniferaTTCCACAGCTTTCTTGAACTalignmentplotGSM458931-2730VIT_02s0025g02680.t01 cdna:novel chromosome:IGGP_12x:2:2331487:2332154:1 gene:VIT_02s0025g02680 transcript:VIT_02s0025g02680.t0103250222
5'    TTCCACA-GCTTTCTTGAACT         3'
      ||||||| ||||||||||||
3' GTTAAGGTGTCCGAAAGAACTTGCCCCAGCCG 5'
2026Vitis viniferaTTCCACAGCTTTCTTGAACTalignmentplotGSM458931-2730VIT_11s0016g01250.t01 cdna:novel chromosome:IGGP_12x:11:1000358:1001752:1 gene:VIT_11s0016g01250 transcript:VIT_11s0016g01250.t003540222
5'    TTCCACA-GCTTTCTTGAACT         3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAGACG 5'
2030Vitis viniferaTTCCACAGCTTTCTTGAACTalignmentplotGSM458931-2730VIT_07s0191g00220.t01 cdna:novel chromosome:IGGP_12x:7:15016666:15018416:-1 gene:VIT_07s0191g00220 transcript:VIT_07s0191g00220.15040.05222.5
5'     TTCCACAGCTTTCTTGAACT         3'
       |||||||||||o|||||  |
3' AACAAAGGTGTCGAAGGAACTCAAAACGGAGG 5'
2033Vitis viniferaTTCCACAGCTTTCTTGAACTalignmentplotGSM458931-2730VIT_15s0048g01740.t01 cdna:novel chromosome:IGGP_12x:15:15941212:15945130:-1 gene:VIT_15s0048g01740 transcript:VIT_15s0048g0174015970222
5'    TTCCACA-GCTTTCTTGAACT         3'
      ||||||| ||||||||||||
3' TCGAAGGTGTCCGAAAGAACTTGCGACCGCCG 5'
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