miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


5 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1194Medicago truncatulaTTCCACAGCTTTCTTGAACTGalignmentplotGSM643817_GDN-4gi|209563259|gb|GE346711.1|GE346711 MEUAZ47TFB JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence05920.0251.253
5'    TTCCACA-GCTTTCTTGAACTG        3'
      o||| || ||||||o|||||||
3' AACGAGGCGTACGAAAGGACTTGACCGAAGAG 5'
1214Medicago truncatulaTTCCACAGCTTTCTTGAACTGalignmentplotGSM643817_GDN-4gi|7560553|gb|AW685817.1|AW685817 NF030F06NR1F1000 Nodulated root Medicago truncatula cDNA clone NF030F06NR 5', mRNA sequence06160.03151.363643.5
5'     TTCCACAGCTTTCTTGAACTG        3'
       | ||||||||||||| | |o|
3' ATCGACGGTGTCGAAAGAAGT-GGCCTCGAAA 5'
1296Medicago truncatulaTTCCACAGCTTTCTTGAACTGalignmentplotGSM643817_GDN-4gi|20308276|gb|BQ165653.1|BQ165653 EST611522 KVKC Medicago truncatula cDNA clone pKVKC-10G6, mRNA sequence06460.01151.363643.5
5'     TTCCACAGCTTTCTTGAACTG        3'
       | ||||||||||||| | |o|
3' ATCGACGGTGTCGAAAGAAGT-GGCCTCGAAA 5'
1298Medicago truncatulaTTCCACAGCTTTCTTGAACTGalignmentplotGSM643817_GDN-4gi|161109516|gb|EY476340.1|EY476340 METAQ25TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence05500.0122113
5'    TTCCACA-GCTTTCTTGAACTG        3'
      ||||||| |||||||||| | |
3' TTCAAGGTGTCCGAAAGAACTCGCCAAAGATG 5'
1339Medicago truncatulaTTCCACAGCTTTCTTGAACTGalignmentplotGSM643817_GDN-4gi|27523320|gb|CA990426.1|CA990426 EST643934 GESD Medicago truncatula cDNA clone GESD-28L1, mRNA sequence05370.05151.363643.5
5'     TTCCACAGCTTTCTTGAACTG        3'
       | ||||||||||||| | |o|
3' ATCGACGGTGTCGAAAGAAGT-GGCCTCGAAA 5'
Entries Per Page
Displaying Page of