miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




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10 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
3Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278334-4059AT5G61440.1 cdna:known chromosome:TAIR10:5:24707500:24708893:1 gene:AT5G61440 transcript:AT5G61440.107190552.5
5'     TTCCACAGCTTTCTTGAACTT        3'
       |o| || ||||||||||||||
3' GAATAGGTTG-CGAAAGAACTTGAATAACTAT 5'
16Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278334-4059AT5G27850.1 cdna:known chromosome:TAIR10:5:9873152:9874598:1 gene:AT5G27850 transcript:AT5G27850.125420.02553
5'    TTCCAC-AGCTTTCTTGAACTT        3'
      |||| | ||||||||oo|||||
3' CGAAAGGAGATCGAAAGAGTTTGAAGGAAGGG 5'
139Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278335-4060AT5G61440.1 cdna:known chromosome:TAIR10:5:24707500:24708893:1 gene:AT5G61440 transcript:AT5G61440.127190222.5
5'     TTCCACAGCTTTCTTGAACTT        3'
       |o| || ||||||||||||||
3' GAATAGGTTG-CGAAAGAACTTGAATAACTAT 5'
152Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278335-4060AT5G27850.1 cdna:known chromosome:TAIR10:5:9873152:9874598:1 gene:AT5G27850 transcript:AT5G27850.125420.0332323
5'    TTCCAC-AGCTTTCTTGAACTT        3'
      |||| | ||||||||oo|||||
3' CGAAAGGAGATCGAAAGAGTTTGAAGGAAGGG 5'
176Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278335-4060AT4G24150.1 cdna:known chromosome:TAIR10:4:12535972:12539387:1 gene:AT4G24150 transcript:AT4G24150.10848012123
5'    TTCCACA-GCTTTCTTGAACTT        3'
      ||||||| ||||||||||||
3' ACTAAGGTGTACGAAAGAACTTGCTCCTGCCG 5'
189Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278335-4060AT2G22840.1 cdna:known chromosome:TAIR10:2:9728756:9731301:1 gene:AT2G22840 transcript:AT2G22840.10792049493
5'    TTCCACA-GCTTTCTTGAACTT        3'
      ||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCCG 5'
248Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278335-4060AT2G45480.1 cdna:known chromosome:TAIR10:2:18745340:18747533:1 gene:AT2G45480 transcript:AT2G45480.105250992
5'    TTCCAC-AGCTTTCTTGAACTT        3'
      |||||| ||||||||||||| |
3' TCTAAGGTGTTCGAAAGAACTTGCAAATGCTG 5'
266Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278335-4060AT5G66420.1 cdna:known chromosome:TAIR10:5:26521674:26525029:-1 gene:AT5G66420 transcript:AT5G66420.1217370.0452.53
5'    TTCCA-CAGCTTTCTTGAACTT        3'
      |o||| ||||||o||oo|||||
3' GTTAGGGTGGTCGAAGGAGTTTGAAACGTCTA 5'
345Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278370-4061AT5G27850.1 cdna:known chromosome:TAIR10:5:9873152:9874598:1 gene:AT5G27850 transcript:AT5G27850.125420.0521213
5'    TTCCAC-AGCTTTCTTGAACTT        3'
      |||| | ||||||||oo|||||
3' CGAAAGGAGATCGAAAGAGTTTGAAGGAAGGG 5'
391Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278370-4061AT2G22840.1 cdna:known chromosome:TAIR10:2:9728756:9731301:1 gene:AT2G22840 transcript:AT2G22840.127920.0339393
5'    TTCCACA-GCTTTCTTGAACTT        3'
      ||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCCG 5'
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