miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


11 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1178Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|13596348|gb|BG581284.1|BG581284 EST483017 GVN Medicago truncatula cDNA clone pGVN-64K10 5' end, mRNA sequence01860.0310103.5
5'     TTCCACAGCTTTCTTGAACTT        3'
       ||||||||||| ||||||  o
3' TTTAAAGGTGTCGAA-GAACTTTCGACGGTAG 5'
1188Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|260523486|gb|GT140315.1|GT140315 METCV28TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence2503030.752
5'     TTCCACAGCTTTCTTGAACTT        3'
       |||||||o|||o||||| |||
3' GTTGAAGGTGTTGAAGGAACTAGAAACTATAC 5'
1209Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|151386367|gb|EV256245.1|EV256245 MTYCU62TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence03050.051473.5
5'    TTCCACA-GCTTTCTTGAACTT        3'
      |||| || ||||||o||||||
3' AAGAAGGCGTACGAAAGGACTTGACAAAAGAA 5'
1246Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|8172992|gb|AW981431.1|AW981431 EST392584 DSIL Medicago truncatula cDNA clone pDSIL-16F7, mRNA sequence05730.03357178.53
5'    TTCCACA-GCTTTCTTGAACTT        3'
      ||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'
1261Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|27233382|gb|CA859018.1|CA859018 EST636273 GLSD Medicago truncatula cDNA clone pGLSD-39B20, mRNA sequence02250.028148143
5'    TTCCACA-GCTTTCTTGAACTT        3'
      ||||||| ||||||||||||
3' TCTAAGGTGTCCGAAAGAACTTGCCATTGCTG 5'
1273Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|20176305|gb|BQ124343.1|BQ124343 EST609919 GLSD Medicago truncatula cDNA clone pGLSD-35E7, mRNA sequence07701263
5'    TTCCAC-AGCTTTCTTGAACTT        3'
      |||||| |||||||||||||
3' ACAAAGGTGTTCGAAAGAACTTGCTAAAGCTG 5'
1286Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|20290484|gb|BQ153425.1|BQ153425 NF036F04IR1F1041 Irradiated Medicago truncatula cDNA clone NF036F04IR 5', mRNA sequence02100.0424243.5
5'     TTCCACAGCTTTCTTGAACTT        3'
       ||| |||||||o|o||||| o
3' GTCGAAGTTGTCGAAGGGACTTGCGTAAATGT 5'
1299Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|10704748|gb|BF004473.1|BF004473 EST432971 KV1 Medicago truncatula cDNA clone pKV1-17B18, mRNA sequence03580.01124312433
5'    TTCCACA-GCTTTCTTGAACTT        3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAAAAG 5'
1312Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|151389884|gb|EV259762.1|EV259762 MTYDZ84TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence05350.0422113
5'    TTCCACA-GCTTTCTTGAACTT        3'
      ||||||| ||||||||||||
3' TTCAAGGTGTCCGAAAGAACTTGCCAAAGATG 5'
1342Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|13372800|gb|BG454006.1|BG454006 NF104A04LF1F1022 Developing leaf Medicago truncatula cDNA clone NF104A04LF 5', mRNA sequence03520.01663
5'    TTCCACA-GCTTTCTTGAACTT        3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAAAGG 5'
1344Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|55446482|gb|AJ847301.1|AJ847301 AJ847301 MtSTW Medicago truncatula cDNA clone MtTW07P18N1, mRNA sequence03702142143
5'    TTCCACA-GCTTTCTTGAACTT        3'
      ||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGATG 5'
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