miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




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9 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
4Arabidopsis thalianaTTCGCTTGCAGAGAGAAATCACalignmentplotGSM278334-4059AT2G27400.1 cdna:known chromosome:TAIR10:2:11721539:11722468:-1 gene:AT2G27400 transcript:AT2G27400.103790441.5
5'     TTCGCTTGCAGAGAGAAATCAC       3'
       |||||||| |||||o|||||||
3' GAGTAAGCGAACATCTCTTTTTAGTGTTGTTT 5'
32Arabidopsis thalianaTTCGCTTGCAGAGAGAAATCACalignmentplotGSM278334-4059AT2G39681.1 cdna:known chromosome:TAIR10:2:16539384:16540417:-1 gene:AT2G39681 transcript:AT2G39681.10418013131.5
5'     TTCGCTTGCAGAGAGAAATCAC       3'
       |||||||| |||||o|||||||
3' TAGTAAGCGAACCTCTCTTTTTAGTGTTTTGG 5'
127Arabidopsis thalianaTTCGCTTGCAGAGAGAAATCACalignmentplotGSM278334-4059AT2G39675.1 cdna:known chromosome:TAIR10:2:16537288:16538277:-1 gene:AT2G39675 transcript:AT2G39675.10379015151.5
5'     TTCGCTTGCAGAGAGAAATCAC       3'
       |||||||| |||||o|||||||
3' AGATAAGCGAACATCTCTTTTTAGTGTTGTTT 5'
138Arabidopsis thalianaTTCGCTTGCAGAGAGAAATCACalignmentplotGSM278335-4060AT2G27400.1 cdna:known chromosome:TAIR10:2:11721539:11722468:-1 gene:AT2G27400 transcript:AT2G27400.10379026261.5
5'     TTCGCTTGCAGAGAGAAATCAC       3'
       |||||||| |||||o|||||||
3' GAGTAAGCGAACATCTCTTTTTAGTGTTGTTT 5'
168Arabidopsis thalianaTTCGCTTGCAGAGAGAAATCACalignmentplotGSM278335-4060AT2G39681.1 cdna:known chromosome:TAIR10:2:16539384:16540417:-1 gene:AT2G39681 transcript:AT2G39681.10418083831.5
5'     TTCGCTTGCAGAGAGAAATCAC       3'
       |||||||| |||||o|||||||
3' TAGTAAGCGAACCTCTCTTTTTAGTGTTTTGG 5'
317Arabidopsis thalianaTTCGCTTGCAGAGAGAAATCACalignmentplotGSM278335-4060AT2G39675.1 cdna:known chromosome:TAIR10:2:16537288:16538277:-1 gene:AT2G39675 transcript:AT2G39675.1037901101101.5
5'     TTCGCTTGCAGAGAGAAATCAC       3'
       |||||||| |||||o|||||||
3' AGATAAGCGAACATCTCTTTTTAGTGTTGTTT 5'
331Arabidopsis thalianaTTCGCTTGCAGAGAGAAATCACalignmentplotGSM278370-4061AT2G27400.1 cdna:known chromosome:TAIR10:2:11721539:11722468:-1 gene:AT2G27400 transcript:AT2G27400.10379029291.5
5'     TTCGCTTGCAGAGAGAAATCAC       3'
       |||||||| |||||o|||||||
3' GAGTAAGCGAACATCTCTTTTTAGTGTTGTTT 5'
368Arabidopsis thalianaTTCGCTTGCAGAGAGAAATCACalignmentplotGSM278370-4061AT2G39681.1 cdna:known chromosome:TAIR10:2:16539384:16540417:-1 gene:AT2G39681 transcript:AT2G39681.12418055551.5
5'     TTCGCTTGCAGAGAGAAATCAC       3'
       |||||||| |||||o|||||||
3' TAGTAAGCGAACCTCTCTTTTTAGTGTTTTGG 5'
489Arabidopsis thalianaTTCGCTTGCAGAGAGAAATCACalignmentplotGSM278370-4061AT2G39675.1 cdna:known chromosome:TAIR10:2:16537288:16538277:-1 gene:AT2G39675 transcript:AT2G39675.10379056561.5
5'     TTCGCTTGCAGAGAGAAATCAC       3'
       |||||||| |||||o|||||||
3' AGATAAGCGAACATCTCTTTTTAGTGTTGTTT 5'
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