miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




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12 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1355Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S188_39V6.1 cdna:known scaffold:ASM242v1:DS545077.1:420675:421969:-1 gene:PP1S188_39V6 transcript:PP1S188_39V6.1058801096411096411.5
5'     TTCTTGCACTCCTCCATCTCT        3'
       |||||||||||||| |||||o
3' CCAGAAGAACGTGAGGAGTTAGAGGGAGTCCT 5'
1364Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S545_4V6.1 cdna:known scaffold:ASM242v1:DS545413.1:16259:19444:1 gene:PP1S545_4V6 transcript:PP1S545_4V6.104490959095901.5
5'     TTCTTGCACTCCTCCATCTCT        3'
       |||||||||||||| |||||o
3' CCAAAAGAACGTGAGGAGCTAGAGGGAGTTGT 5'
1372Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S545_4V6.1 cdna:known scaffold:ASM242v1:DS545413.1:16259:19444:1 gene:PP1S545_4V6 transcript:PP1S545_4V6.1211420.05356835682.5
5'     TTCTTGCACTCCTCCATCTCT        3'
       |||||||| ||||| |||||o
3' CCAAAAGAACGTAAGGAGCTAGAGGGAGTTGT 5'
1374Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S459_10V6.1 cdna:known scaffold:ASM242v1:DS545339.1:132585:133622:1 gene:PP1S459_10V6 transcript:PP1S459_10V6.1056802575551511.5
5'     TTCTTGCACTCCTCCATCTCT        3'
       |||||||||||||| |||||o
3' CCAGAAGAACGTGAGGAGTTAGAGGGAGTTCT 5'
1380Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S56_173V6.1 cdna:known scaffold:ASM242v1:DS544945.1:1196257:1197041:-1 gene:PP1S56_173V6 transcript:PP1S56_173V6.124520.04622.5
5'     TTCTTGCACTCCTCCATCTCT        3'
        ||||||||||||| |||||o
3' GCAGCAGAACGTGAGGAGCTAGAGGGCGTCGT 5'
1392Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S251_44V6.1 cdna:known scaffold:ASM242v1:DS545140.1:336620:337706:-1 gene:PP1S251_44V6 transcript:PP1S251_44V6.106490348934891.5
5'     TTCTTGCACTCCTCCATCTCT        3'
       |||||||||||||| |||||o
3' CCAGAAGAACGTGAGGAGTTAGAGGGAGTTAT 5'
1436Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S109_145V6.1 cdna:known scaffold:ASM242v1:DS544998.1:906778:907714:1 gene:PP1S109_145V6 transcript:PP1S109_145V6.1051802575551511.5
5'     TTCTTGCACTCCTCCATCTCT        3'
       |||||||||||||| |||||o
3' CCAGAAGAACGTGAGGAGTTAGAGGGAGTTGT 5'
1440Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S12_231V6.1 cdna:known scaffold:ASM242v1:DS544901.1:1365802:1367197:-1 gene:PP1S12_231V6 transcript:PP1S12_231V6.105740109210921.5
5'     TTCTTGCACTCCTCCATCTCT        3'
       |||||||||||||| |||||o
3' CCAAAAGAACGTGAGGAGCTAGAGGGAGTTGT 5'
1442Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S46_42V6.1 cdna:known scaffold:ASM242v1:DS544935.1:471232:472221:1 gene:PP1S46_42V6 transcript:PP1S46_42V6.10568021216212161.5
5'     TTCTTGCACTCCTCCATCTCT        3'
       |||||||||||||| |||||o
3' TCAGAAGAACGTGAGGAGTTAGAGGGAGTCCT 5'
1443Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S339_15V6.1 cdna:known scaffold:ASM242v1:DS545227.1:82462:83283:1 gene:PP1S339_15V6 transcript:PP1S339_15V6.10434040401.5
5'     TTCTTGCACTCCTCCATCTCT        3'
       |||||||||||||| |||||o
3' GCAGAAGAACGTGAGGAGCTAGAGGGAGTTGT 5'
1446Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S352_14V6.1 cdna:known scaffold:ASM242v1:DS545240.1:102740:103698:-1 gene:PP1S352_14V6 transcript:PP1S352_14V6.1051602575551511.5
5'     TTCTTGCACTCCTCCATCTCT        3'
       |||||||||||||| |||||o
3' CCAGAAGAACGTGAGGAGTTAGAGGGAGTTGT 5'
1457Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S66_47V6.1 cdna:known scaffold:ASM242v1:DS544955.1:188370:189289:1 gene:PP1S66_47V6 transcript:PP1S66_47V6.1052902575551512.5
5'     TTCTTGCACTCCTCCATCTCT        3'
       ||||||||||| || |||||o
3' CCAGAAGAACGTGAGAAGCTAGAGGGAGTTGT 5'
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