miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


18 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1496Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553688-9229Solyc12g038520.1.1 cdna:novel chromosome:SL2.40:12:35933880:35935930:-1 gene:Solyc12g038520.1 transcript:Solyc12g038520.1.109820199.52.5
5'     TTGACAGAAGATAGAGAGCAT        3'
        |||||||||| ||||||||o
3' ACTCTACTGTCTTCTCTCTCTCGTGTCGGTCT 5'
1509Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553688-9229Solyc05g015510.2.1 cdna:novel chromosome:SL2.40:5:10767268:10772201:-1 gene:Solyc05g015510.2 transcript:Solyc05g015510.2.10296203913911.5
5'     TTGACAGAAGATAGAGAGCAT        3'
       ||||||||||| ||||||||o
3' AATCAACTGTCTTCTCTCTCTCGTGCTCCTTT 5'
1512Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553688-9229Solyc02g070280.2.1 cdna:novel chromosome:SL2.40:2:34632835:34637531:-1 gene:Solyc02g070280.2 transcript:Solyc02g070280.2.10391012123
5'     TTGACAGAAGATAGAGAGCAT        3'
        |o||||||||o||||||||
3' GTCACATTGTCTTCTGTCTCTCGTTCCGCCTC 5'
1514Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553688-9229Solyc10g078700.1.1 cdna:novel chromosome:SL2.40:10:59754038:59758728:-1 gene:Solyc10g078700.1 transcript:Solyc10g078700.1.1077501981981.5
5'     TTGACAGAAGATAGAGAGCAT        3'
       ||||||||||| ||||||||o
3' GCTAAACTGTCTTCTCTCTCTCGTGGTGAACT 5'
1516Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553688-9229Solyc05g015840.2.1 cdna:novel chromosome:SL2.40:5:12394400:12397051:1 gene:Solyc05g015840.2 transcript:Solyc05g015840.2.127600.0210102.5
5'     TTGACAGAAGATAGAGAGCAT        3'
        |||||||||| ||||||||o
3' CGACTACTGTCTTCTCTCTCTCGTGCTAGTCT 5'
1521Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553688-9229Solyc03g114850.2.1 cdna:novel chromosome:SL2.40:3:58796755:58802237:1 gene:Solyc03g114850.2 transcript:Solyc03g114850.2.1214820199.52
5'     TTGACAGAAGATAGAGAGCAT        3'
        |||||||||| |||||||||
3' ACTCTACTGTCTTCTCTCTCTCGTAACGACCT 5'
1529Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553688-9229Solyc04g045560.2.1 cdna:novel chromosome:SL2.40:4:33188973:33194461:1 gene:Solyc04g045560.2 transcript:Solyc04g045560.2.10799020201.5
5'     TTGACAGAAGATAGAGAGCAT        3'
       ||||||||||| ||||||||o
3' AGTAAACTGTCTTCTCTCTCTCGTGCTCCATT 5'
1545Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553689-9230Solyc12g038520.1.1 cdna:novel chromosome:SL2.40:12:35933880:35935930:-1 gene:Solyc12g038520.1 transcript:Solyc12g038520.1.109820157.52.5
5'     TTGACAGAAGATAGAGAGCAT        3'
        |||||||||| ||||||||o
3' ACTCTACTGTCTTCTCTCTCTCGTGTCGGTCT 5'
1552Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553689-9230Solyc02g077920.2.1 cdna:novel chromosome:SL2.40:2:37320931:37323107:-1 gene:Solyc02g077920.2 transcript:Solyc02g077920.2.128400660
5'     TTGACAGAAGATAGAGAGCAT        3'
       |||||||||||||||||||||
3' CCTTAACTGTCTTCTATCTCTCGTACGAATTG 5'
1563Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553689-9230Solyc05g012040.2.1 cdna:novel chromosome:SL2.40:5:5268986:5273711:1 gene:Solyc05g012040.2 transcript:Solyc05g012040.2.1214300772
5'     TTGACAGAAGATAGAGAGCAT        3'
       o|||||||||| ||||||||o
3' ACCCGACTGTCTTCTCTCTCTCGTGTTCTCCT 5'
1566Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553689-9230Solyc05g015510.2.1 cdna:novel chromosome:SL2.40:5:10767268:10772201:-1 gene:Solyc05g015510.2 transcript:Solyc05g015510.2.102962092921.5
5'     TTGACAGAAGATAGAGAGCAT        3'
       ||||||||||| ||||||||o
3' AATCAACTGTCTTCTCTCTCTCGTGCTCCTTT 5'
1568Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553689-9230Solyc10g078700.1.1 cdna:novel chromosome:SL2.40:10:59754038:59758728:-1 gene:Solyc10g078700.1 transcript:Solyc10g078700.1.10775067671.5
5'     TTGACAGAAGATAGAGAGCAT        3'
       ||||||||||| ||||||||o
3' GCTAAACTGTCTTCTCTCTCTCGTGGTGAACT 5'
1578Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553689-9230Solyc03g114850.2.1 cdna:novel chromosome:SL2.40:3:58796755:58802237:1 gene:Solyc03g114850.2 transcript:Solyc03g114850.2.1214820157.52
5'     TTGACAGAAGATAGAGAGCAT        3'
        |||||||||| |||||||||
3' ACTCTACTGTCTTCTCTCTCTCGTAACGACCT 5'
1581Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553689-9230Solyc04g045560.2.1 cdna:novel chromosome:SL2.40:4:33188973:33194461:1 gene:Solyc04g045560.2 transcript:Solyc04g045560.2.10799012121.5
5'     TTGACAGAAGATAGAGAGCAT        3'
       ||||||||||| ||||||||o
3' AGTAAACTGTCTTCTCTCTCTCGTGCTCCATT 5'
1610Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553690-9231Solyc02g077920.2.1 cdna:novel chromosome:SL2.40:2:37320931:37323107:-1 gene:Solyc02g077920.2 transcript:Solyc02g077920.2.12840030300
5'     TTGACAGAAGATAGAGAGCAT        3'
       |||||||||||||||||||||
3' CCTTAACTGTCTTCTATCTCTCGTACGAATTG 5'
1619Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553690-9231Solyc05g015510.2.1 cdna:novel chromosome:SL2.40:5:10767268:10772201:-1 gene:Solyc05g015510.2 transcript:Solyc05g015510.2.102962050501.5
5'     TTGACAGAAGATAGAGAGCAT        3'
       ||||||||||| ||||||||o
3' AATCAACTGTCTTCTCTCTCTCGTGCTCCTTT 5'
1621Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553690-9231Solyc10g078700.1.1 cdna:novel chromosome:SL2.40:10:59754038:59758728:-1 gene:Solyc10g078700.1 transcript:Solyc10g078700.1.10775065651.5
5'     TTGACAGAAGATAGAGAGCAT        3'
       ||||||||||| ||||||||o
3' GCTAAACTGTCTTCTCTCTCTCGTGGTGAACT 5'
1629Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553690-9231Solyc05g012040.2.1 cdna:novel chromosome:SL2.40:5:5268986:5273711:1 gene:Solyc05g012040.2 transcript:Solyc05g012040.2.1214300.01222
5'     TTGACAGAAGATAGAGAGCAT        3'
       o|||||||||| ||||||||o
3' ACCCGACTGTCTTCTCTCTCTCGTGTTCTCCT 5'
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