miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


5 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1495Solanum lycopersicumTTGAGCCGTGCCAATATCACGalignmentplotGSM553688-9229Solyc08g078800.1.1 cdna:novel chromosome:SL2.40:8:59683241:59684665:-1 gene:Solyc08g078800.1 transcript:Solyc08g078800.1.124040.0228282.5
5'     TTGAGCCGTGCCAATATCACG        3'
       ||||||||o||||||||||
3' AACTAACTCGGCGCGGTTATAGTAAACGCGCA 5'
1498Solanum lycopersicumTTGAGCCGTGCCAATATCACGalignmentplotGSM553688-9229Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.101578050502.5
5'     TTGAGCCGTGCCAATATCACG        3'
       ||||||||o||||||||| |
3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'
1553Solanum lycopersicumTTGAGCCGTGCCAATATCACGalignmentplotGSM553689-9230Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.121578060602.5
5'     TTGAGCCGTGCCAATATCACG        3'
       ||||||||o||||||||| |
3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'
1595Solanum lycopersicumTTGAGCCGTGCCAATATCACGalignmentplotGSM553690-9231Solyc08g078800.1.1 cdna:novel chromosome:SL2.40:8:59683241:59684665:-1 gene:Solyc08g078800.1 transcript:Solyc08g078800.1.12404011112.5
5'     TTGAGCCGTGCCAATATCACG        3'
       ||||||||o||||||||||
3' AACTAACTCGGCGCGGTTATAGTAAACGCGCA 5'
1601Solanum lycopersicumTTGAGCCGTGCCAATATCACGalignmentplotGSM553690-9231Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.10157801631632.5
5'     TTGAGCCGTGCCAATATCACG        3'
       ||||||||o||||||||| |
3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'
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