miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


5 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1370Physcomitrella patensTTGCATGGAGTCTATGTCTGGAalignmentplotGSM410805-5251PP1S209_130V6.2 cdna:known scaffold:ASM242v1:DS545098.1:754290:759111:-1 gene:PP1S209_130V6 transcript:PP1S209_130V6.20100406602202
5'     TTGCATGGAGTCTATGTCTGGA       3'
       ||||||||||||||| |||||
3' TTCCAACGTACCTCAGATAAAGACCGAAGCTT 5'
1384Physcomitrella patensTTGCATGGAGTCTATGTCTGGAalignmentplotGSM410805-5251PP1S55_304V6.2 cdna:known scaffold:ASM242v1:DS544944.1:1829258:1833155:-1 gene:PP1S55_304V6 transcript:PP1S55_304V6.201118054516136292.5
5'     TTGCATGGAGTCTATGTCTGGA       3'
       ||||||||||||||| ||||o
3' TACAAACGTACCTCAGATA-AGACTGACACTT 5'
1389Physcomitrella patensTTGCATGGAGTCTATGTCTGGAalignmentplotGSM410805-5251PP1S118_209V6.2 cdna:known scaffold:ASM242v1:DS545007.1:1023491:1026970:-1 gene:PP1S118_209V6 transcript:PP1S118_209V6.201204042874214371.5
5'     TTGCATGGAGTCTATGTCTGGA       3'
       ||||||||||||||| ||||o|
3' TACAAACGTACCTCAGATA-AGACTTACACTA 5'
1431Physcomitrella patensTTGCATGGAGTCTATGTCTGGAalignmentplotGSM410805-5251PP1S78_222V6.1 cdna:known scaffold:ASM242v1:DS544967.1:1504432:1507501:1 gene:PP1S78_222V6 transcript:PP1S78_222V6.1014580.011821823.5
5'     TTGCATGGAGTCTATGTCTGGA       3'
       |||||o||||||||||o|o |
3' TCCTAACGTGCCTCAGATACGGGACAAACTTC 5'
1462Physcomitrella patensTTGCATGGAGTCTATGTCTGGAalignmentplotGSM410805-5251PP1S267_56V6.1 cdna:known scaffold:ASM242v1:DS545156.1:347789:352289:1 gene:PP1S267_56V6 transcript:PP1S267_56V6.101852054516136291.5
5'     TTGCATGGAGTCTATGTCTGGA       3'
       ||||||||||||||| ||||o|
3' TACAAACGTACCTCAGATA-AGACTTACACTT 5'
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